View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5205_low_4 (Length: 290)
Name: NF5205_low_4
Description: NF5205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5205_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 1738270 - 1738008
Alignment:
| Q |
17 |
agcaaaggcagggaaaagaagtgcatatatatatagttatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1738270 |
agcaaaggcagggaaaagaagtgcatatatatatagttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaa |
1738171 |
T |
|
| Q |
117 |
taaaataagtgcactcatgttggttatgtaagtcaaactaaacaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1738170 |
taaaataagtgcactcatgttggttatgtaagtcaaactaaacaaaaataaataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatg |
1738071 |
T |
|
| Q |
216 |
gaagtatgtagatctagt------agtgtatcattgacatcttccacccatttggcttgattt |
272 |
Q |
| |
|
| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1738070 |
gcagtatgtagatctagtagtgtaagtgtaccattgacatcttccacccatttggcttgattt |
1738008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 252
Target Start/End: Complemental strand, 1716829 - 1716634
Alignment:
| Q |
70 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa------------actaa |
157 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||| | || ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
|
| Q |
158 |
acaaaaataa-taaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatctt |
252 |
Q |
| |
|
|||||||||| ||||||||||||| ||| |||||||||||| || |||||||||||||| | |||||||||||||||||||| | |||||||||| |
|
|
| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatctt |
1716634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University