View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208-Insertion-1 (Length: 154)
Name: NF5208-Insertion-1
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208-Insertion-1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 8e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 36723895 - 36723775
Alignment:
| Q |
34 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
133 |
Q |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
134 |
cacataatactaactcccaca |
154 |
Q |
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| T |
36723795 |
cacataatactagctctcaca |
36723775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 717447 - 717577
Alignment:
| Q |
12 |
gtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgc |
110 |
Q |
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| T |
717447 |
gtgaatttggatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcac |
717546 |
T |
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| Q |
111 |
tcatgagttagctcagatagtcccacataat |
141 |
Q |
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| T |
717547 |
ttacgagttagctcatatagccccacataat |
717577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 36724287 - 36724252
Alignment:
| Q |
12 |
gtgaatttagatgcattatagatgcttgtagacagt |
47 |
Q |
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| T |
36724287 |
gtgaatttagatgcattatagatgcttgtagacagt |
36724252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 712237 - 712314
Alignment:
| Q |
12 |
gtgaatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
89 |
Q |
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| T |
712237 |
gtgaatttggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 14541174 - 14541248
Alignment:
| Q |
15 |
aatttagatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
89 |
Q |
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| T |
14541174 |
aatttagatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 127
Target Start/End: Complemental strand, 19283403 - 19283376
Alignment:
| Q |
100 |
aatgaggttgctcatgagttagctcaga |
127 |
Q |
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| T |
19283403 |
aatgaggttgctcatgagttagctcaga |
19283376 |
T |
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