View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_high_18 (Length: 247)
Name: NF5208_high_18
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 27207839 - 27208073
Alignment:
| Q |
2 |
cagctgaactttccattgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtccta |
101 |
Q |
| |
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||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27207839 |
cagctgaaccttccgttgttgtcggagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtccta |
27207938 |
T |
|
| Q |
102 |
actcaaaacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcc |
201 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27207939 |
actcaaaacccgttgtcgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtatgcacacctatttgtgaatgtcaccttagctcc |
27208038 |
T |
|
| Q |
202 |
tccaaccactgcatacaaatgcaaaatacgttcat |
236 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
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| T |
27208039 |
tccaaccactgcatacaaatgaaaaatacgttcat |
27208073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 27432922 - 27433153
Alignment:
| Q |
5 |
ctgaactttccattgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaact |
104 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27432922 |
ctgaactttccattgttgttggagcatccggttcgtccccaaaatcgacccgaccatggtgatggaaggtccacctcaattgttgctccaggtcctaact |
27433021 |
T |
|
| Q |
105 |
caaaacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctcc |
204 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27433022 |
caaaacccgttgttgatagctgaggcttttggtctccagttaacgttcccggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctcc |
27433121 |
T |
|
| Q |
205 |
aaccactgcatacaaatgcaaaatacgttcat |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
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| T |
27433122 |
aaccgctgcatacaaatgcaaaatacgttcat |
27433153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 27221171 - 27221386
Alignment:
| Q |
1 |
acagctgaactttccattgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||| || |||||| ||| |
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|
| T |
27221171 |
acagctgaactttccattgttgttgaagcatccggttcggccccaaaatctacccgaccatggtgatggaaggtccactgaaatagtaactccagatccc |
27221270 |
T |
|
| Q |
101 |
aactcaaaacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctc |
200 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27221271 |
aactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaaagtcaccttagctc |
27221370 |
T |
|
| Q |
201 |
ctccaaccactgcata |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
27221371 |
ctccaaccactgcata |
27221386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 27215209 - 27215424
Alignment:
| Q |
1 |
acagctgaactttccattgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| || |||||| ||| |
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|
| T |
27215209 |
acagctgaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatccc |
27215308 |
T |
|
| Q |
101 |
aactcaaaacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctc |
200 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27215309 |
aactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctc |
27215408 |
T |
|
| Q |
201 |
ctccaaccactgcata |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27215409 |
ctccaaccactgcata |
27215424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27443692 - 27443477
Alignment:
| Q |
1 |
acagctgaactttccattgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcct |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||| || ||||||||||||||||||||||| | ||| || |||||| ||| |
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|
| T |
27443692 |
acagctgaactttccattgttgttgaagcatccggttcggccccaaaatcgaccagaccatggtgatggaaggtccactgaaatagtaactccagatccc |
27443593 |
T |
|
| Q |
101 |
aactcaaaacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctc |
200 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27443592 |
aactcgaaacctgtcgttgatagctgaggtttttggtctccggttaacgttcctggccatacagtgtattcacacctatttgtgaacgtcaccttagctc |
27443493 |
T |
|
| Q |
201 |
ctccaaccactgcata |
216 |
Q |
| |
|
||||||| |||||||| |
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| T |
27443492 |
ctccaacaactgcata |
27443477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 27389139 - 27389351
Alignment:
| Q |
8 |
aactttccattgttgtctgagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaa |
107 |
Q |
| |
|
|||| ||| |||||| ||||||||| |||||| ||||||||| || |||||||| || |||| ||| | | | |||||||||||||||||||| | |
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|
| T |
27389139 |
aactgtccgttgttggttgagcatccggttcgggcccaaaatcgacctgaccatggggaaggaatttccgctgagttcgttgctccaggtcctaactcga |
27389238 |
T |
|
| Q |
108 |
aacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaac |
207 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||| ||||| |||||||| ||| | ||||||| | | |
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|
| T |
27389239 |
aacctgttgttgatagctgaggtttttggtctccggttaaggttcctggccatacggtgtatccacatctattcgtgaatgttaccgtggctcctctagc |
27389338 |
T |
|
| Q |
208 |
cactgcatacaaa |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
27389339 |
agctgcatacaaa |
27389351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 27455093 - 27455294
Alignment:
| Q |
26 |
gagcatccagttcggccccaaaatcttcccgaccatggtgatggaaggtccaccgcaattgttgctccaggtcctaactcaaaacccgtcgttgatagct |
125 |
Q |
| |
|
|||||||| ||||||| ||||||| || || |||||||||||||||||||| | ||| || ||| || ||| || || |||| |||||| |||||| |
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|
| T |
27455093 |
gagcatccgattcggcctcaaaatcaacctgatcatggtgatggaaggtccactgaaatagta-ctctagatcccaagtcgaaacttgtcgttcatagct |
27455191 |
T |
|
| Q |
126 |
gaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaatgcaa |
225 |
Q |
| |
|
|||||||||| |||| |||||||||| || | |||||| | ||||||||| |||| |||||||||||||||||||||||||| |||| || |||||||| |
|
|
| T |
27455192 |
gaggtttttg-tctctagttaacgtttctagtcatacaatttattcacacttattggtgaatgtcaccttagctcctccaactactgattagaaatgcaa |
27455290 |
T |
|
| Q |
226 |
aata |
229 |
Q |
| |
|
|||| |
|
|
| T |
27455291 |
aata |
27455294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 27410183 - 27410307
Alignment:
| Q |
96 |
gtcctaactcaaaacccgtcgttgatagctgaggtttttggtctccagttaacgttcctggccatacagtgtattcacacctatttgtgaatgtcacctt |
195 |
Q |
| |
|
|||| ||||||||||| || ||||||| ||||| |||| || ||| || ||||||||||||||||| ||| |||| ||||| |||||||||||||| |
|
|
| T |
27410183 |
gtcccaactcaaaacctgttgttgataattgaggggtttgagctgtagtaaaggttcctggccatacagtatatccacatctattcgtgaatgtcacctt |
27410282 |
T |
|
| Q |
196 |
agctcctccaaccactgcatacaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27410283 |
ggctcctccaaccactgcatacaaa |
27410307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 27415821 - 27415750
Alignment:
| Q |
149 |
gttcctggccatacagtgtattcacacctatttgtgaatgtcaccttagctcctccaaccactgcatacaaa |
220 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
27415821 |
gttcctggccatacagtgtatacacatctattcgtgaatgtcaccttggctcctccaacctctgcagacaaa |
27415750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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