View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5208_high_2 (Length: 616)
Name: NF5208_high_2
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_high_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Complemental strand, 38244888 - 38244485
Alignment:
| Q |
17 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
116 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244888 |
caacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
38244789 |
T |
|
| Q |
117 |
ttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgggaacatgggtatggtccatgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38244788 |
ttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcattgggaacatgggtatggtccatgt |
38244689 |
T |
|
| Q |
217 |
ttcttgtgtggtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccccaacatcagtaa |
316 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38244688 |
ttctcgtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccctaacatcagtaa |
38244589 |
T |
|
| Q |
317 |
caaataaattgatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaagtagtagaagtattcattttcat |
416 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38244588 |
caaataaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaagatcaagatgagaagaagtagtagaagtattcattttcat |
38244489 |
T |
|
| Q |
417 |
catc |
420 |
Q |
| |
|
|||| |
|
|
| T |
38244488 |
catc |
38244485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 21 - 394
Target Start/End: Complemental strand, 38261184 - 38260812
Alignment:
| Q |
21 |
aacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttca |
120 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38261184 |
aacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcctctttcgaatcctagaaatgtatctcttttttctgtcttcttca |
38261085 |
T |
|
| Q |
121 |
ctttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgggaacatgggtatggtccatgtttct |
220 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
38261084 |
ctttcgaacttgcagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcattttgaacatgggtatggtccatatttct |
38260985 |
T |
|
| Q |
221 |
tgtgtggtaggctgtggattttaccatcatcgatattttcattgctcttcttcttcttccttttatcattcttgttaatatccccaacatcagtaacaaa |
320 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||| || |||| |||||||||| || ||||||||||| ||| | |
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|
| T |
38260984 |
tgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttctttctcatatcgttcttgttaacat-cccaacatcagcaactga |
38260886 |
T |
|
| Q |
321 |
taaattgatagtttgagaaggcagttcttgtagttgtgatgataaacctacatcaagatcaagatgagaagaag |
394 |
Q |
| |
|
| ||| || ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
38260885 |
aatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggagatcaagatgagaagaag |
38260812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 460 - 597
Target Start/End: Complemental strand, 38244445 - 38244308
Alignment:
| Q |
460 |
atgatgtcatcattaatattaattgatgatgttgatgtttgcagatgcccaaactgagcttcaagaatcagcatcgcttttttgattcccggagcatgac |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
38244445 |
atgatgtcatcattaatattaattgatgatgttgatgtttgcagatgtccaaactgagcttcaagaatctgcatcgcttttttgattcccggagcatgac |
38244346 |
T |
|
| Q |
560 |
taccaaaattattgatcccagctgatgatgatgaatcc |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38244345 |
taccaaaattattgatcccagctgatgatgatgaatcc |
38244308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 483 - 596
Target Start/End: Complemental strand, 38260714 - 38260601
Alignment:
| Q |
483 |
tgatgatgttgatgtttgcagatgcccaaactgagcttcaagaatcagcatcgcttttttgattcccggagcatgactaccaaaattattgatcccagct |
582 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
38260714 |
tgatgacgttgatgtatgcaaatgcccaaactgagtttcaagaatctccattgcttttaggattcccggagcatgactaccaaaattattggtaccaact |
38260615 |
T |
|
| Q |
583 |
gatgatgatgaatc |
596 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38260614 |
gatgatgatgaatc |
38260601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 47285507 - 47285733
Alignment:
| Q |
22 |
acaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttcac |
121 |
Q |
| |
|
|||| ||||| ||||||| |||| |||| ||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
47285507 |
acagaaacaagagtagttgttccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctcttcttcac |
47285606 |
T |
|
| Q |
122 |
tttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgggaacatgggtatggtccatgtttctt |
221 |
Q |
| |
|
|||| |||||||||||||||| |||||| ||| ||||| ||||| ||| | | || ||||||||| | ||||| | ||| ||||||||||| || |
|
|
| T |
47285607 |
tttcagtcttgtagtgacttgat---acatgagcagcgaatttctgtgatgttgctattactttgttgcactctgaacacgtgtacggtccatgtttatt |
47285703 |
T |
|
| Q |
222 |
gtgtggtaggctgtggattttaccatcatc |
251 |
Q |
| |
|
||| ||||| ||||||||| |||||||||| |
|
|
| T |
47285704 |
gtgaggtagactgtggattctaccatcatc |
47285733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 25 - 251
Target Start/End: Original strand, 47307067 - 47307290
Alignment:
| Q |
25 |
ggaacaaaagtagttattccgtcattgagcttttg-aatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttcttcactt |
123 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| |||| || || ||||||||||| |||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
47307067 |
ggaacaaaagtagttgttccatcattgagcttttggaatcgga-gatctggtctctttcggatcctagacatgtatctcttttttttctcttcttcactt |
47307165 |
T |
|
| Q |
124 |
tcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgaagtttcaaatattttgttgcattgggaacatgggtatggtccatgtttcttgt |
223 |
Q |
| |
|
|| |||||||||| |||||| ||||| |||||||||||||||| ||| | | || |||||| || | | ||| | |||||||||| ||| |||| |
|
|
| T |
47307166 |
tctgacttgtagtgtattgatg---catgactagcaaatttttgtgatgttgctagtactttgttacactttggacacgtatatggtccatttttattgt |
47307262 |
T |
|
| Q |
224 |
gtggtaggctgtggattttaccatcatc |
251 |
Q |
| |
|
||| ||| |||||| || |||||||||| |
|
|
| T |
47307263 |
gtgatagactgtgggttctaccatcatc |
47307290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 2589549 - 2589674
Alignment:
| Q |
17 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
116 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||||||||| | ||| ||||||||||| ||| |||| |||||||||||||||| ||||| |
|
|
| T |
2589549 |
caacaactggaacaaaagtagttgttccatcattgagcttttgaatccggagatttggtctctttcggatcttagacatgtatctcttttttctctcttc |
2589648 |
T |
|
| Q |
117 |
ttcactttcgaacttgtagtgacttg |
142 |
Q |
| |
|
| | |||| ||||||||||||||| |
|
|
| T |
2589649 |
tagagtttcagacttgtagtgacttg |
2589674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 10299610 - 10299735
Alignment:
| Q |
18 |
aacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctc-ttttttctgtcttc |
116 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||| ||| |||| |||||||| |||||||| ||||| |
|
|
| T |
10299610 |
aacaaccggaacaaaagtagttgttctatcattgagcttttgaatctggagatttggtctcttttagatcatagacatgtatctctttttttctctcttc |
10299709 |
T |
|
| Q |
117 |
ttcactttcgaacttgtagtgacttg |
142 |
Q |
| |
|
| | |||| ||||||||||||||| |
|
|
| T |
10299710 |
tagagtttcagacttgtagtgacttg |
10299735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 2589923 - 2589833
Alignment:
| Q |
17 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttt |
107 |
Q |
| |
|
||||||| |||||||||| ||| |||| ||||||| |||||||| |||||| ||||||||| | |||||||| ||||||||||||| |
|
|
| T |
2589923 |
caacaactcgaacaaaagttgttgttccaacattgagtttttgaatatgaagatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 22222657 - 22222532
Alignment:
| Q |
17 |
caacaacaggaacaaaagtagttattccgtcattgagcttttgaatctgaagacgcggtctctttcgaatcctagaattgtatctcttttttctgtcttc |
116 |
Q |
| |
|
||||||| | |||||| || ||| |||| ||||||| ||||||||||| ||| | ||||||| | |||||||| |||||||||||||||| ||||| |
|
|
| T |
22222657 |
caacaactgaaacaaatgttgttgttccaacattgagtttttgaatctgcagatttgttctctttgggatcctagacatgtatctcttttttctttcttc |
22222558 |
T |
|
| Q |
117 |
ttcactttcgaacttgtagtgacttg |
142 |
Q |
| |
|
|| | |||| || ||||||||||||| |
|
|
| T |
22222557 |
ttgagtttcaaaattgtagtgacttg |
22222532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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