View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5208_high_21 (Length: 233)

Name: NF5208_high_21
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5208_high_21
NF5208_high_21
[»] chr4 (27 HSPs)
chr4 (20-233)||(46569752-46569965)
chr4 (84-233)||(8665156-8665305)
chr4 (84-233)||(8647887-8648036)
chr4 (84-233)||(26364014-26364163)
chr4 (88-233)||(40630733-40630878)
chr4 (84-233)||(50674116-50674265)
chr4 (84-233)||(55085635-55085784)
chr4 (88-233)||(35662191-35662336)
chr4 (84-233)||(50262968-50263117)
chr4 (84-233)||(54882769-54882918)
chr4 (87-233)||(6655705-6655851)
chr4 (84-233)||(12073142-12073290)
chr4 (84-233)||(41964166-41964313)
chr4 (88-233)||(379128-379273)
chr4 (88-233)||(46703250-46703394)
chr4 (140-233)||(2209457-2209550)
chr4 (88-233)||(33989612-33989756)
chr4 (136-233)||(27417273-27417370)
chr4 (88-201)||(34112392-34112506)
chr4 (89-233)||(12119289-12119432)
chr4 (123-233)||(33089648-33089758)
chr4 (191-233)||(10071634-10071676)
chr4 (188-233)||(10072020-10072065)
chr4 (181-233)||(3785840-3785891)
chr4 (140-233)||(38811405-38811497)
chr4 (84-117)||(2209578-2209611)
chr4 (197-233)||(8653349-8653385)
[»] scaffold0466 (1 HSPs)
scaffold0466 (87-233)||(7077-7223)
[»] chr1 (22 HSPs)
chr1 (84-233)||(37168046-37168195)
chr1 (84-233)||(29135997-29136145)
chr1 (88-233)||(34603325-34603470)
chr1 (88-233)||(34602613-34602758)
chr1 (88-233)||(7482504-7482650)
chr1 (84-233)||(11348447-11348596)
chr1 (84-233)||(13547359-13547508)
chr1 (84-233)||(13549270-13549419)
chr1 (84-233)||(37033343-37033492)
chr1 (84-233)||(37879181-37879330)
chr1 (84-233)||(42298245-42298394)
chr1 (89-233)||(19754240-19754384)
chr1 (84-233)||(193361-193509)
chr1 (84-233)||(19752435-19752583)
chr1 (84-233)||(28242138-28242286)
chr1 (84-233)||(47114921-47115069)
chr1 (84-207)||(31925976-31926099)
chr1 (84-233)||(47255610-47255753)
chr1 (123-200)||(4535783-4535861)
chr1 (93-233)||(9109680-9109820)
chr1 (93-197)||(41135605-41135709)
chr1 (88-232)||(16216769-16216911)
[»] chr3 (22 HSPs)
chr3 (84-233)||(43404003-43404152)
chr3 (84-233)||(6095869-6096018)
chr3 (84-233)||(49199740-49199890)
chr3 (84-233)||(30235874-30236023)
chr3 (84-233)||(34490962-34491111)
chr3 (84-233)||(43402060-43402209)
chr3 (84-233)||(54593454-54593603)
chr3 (88-233)||(46860220-46860365)
chr3 (84-233)||(47304001-47304149)
chr3 (84-233)||(55302235-55302384)
chr3 (84-233)||(40913087-40913237)
chr3 (84-233)||(36018600-36018749)
chr3 (84-233)||(4569700-4569849)
chr3 (93-233)||(41819801-41819940)
chr3 (89-225)||(5434152-5434289)
chr3 (88-199)||(1683270-1683382)
chr3 (110-233)||(28074366-28074488)
chr3 (186-233)||(31340448-31340495)
chr3 (88-199)||(35138980-35139091)
chr3 (155-233)||(39127308-39127386)
chr3 (181-233)||(1737257-1737308)
chr3 (114-225)||(36796168-36796279)
[»] chr7 (16 HSPs)
chr7 (84-233)||(6431720-6431869)
chr7 (84-233)||(34310986-34311135)
chr7 (84-233)||(2390031-2390180)
chr7 (84-224)||(48599604-48599744)
chr7 (84-233)||(2361241-2361390)
chr7 (84-233)||(4512660-4512808)
chr7 (88-233)||(3258745-3258890)
chr7 (84-233)||(29608490-29608634)
chr7 (84-199)||(8359588-8359703)
chr7 (84-226)||(4510818-4510959)
chr7 (84-233)||(6360182-6360331)
chr7 (84-226)||(4508976-4509117)
chr7 (89-233)||(22328673-22328818)
chr7 (84-233)||(22269724-22269871)
chr7 (167-233)||(32358189-32358255)
chr7 (158-233)||(22552782-22552856)
[»] chr5 (17 HSPs)
chr5 (84-233)||(40147010-40147159)
chr5 (84-233)||(27015281-27015430)
chr5 (84-227)||(213224-213367)
chr5 (84-233)||(38746754-38746903)
chr5 (87-233)||(5057797-5057942)
chr5 (84-233)||(28278064-28278214)
chr5 (84-233)||(27637884-27638034)
chr5 (88-233)||(33906303-33906447)
chr5 (145-232)||(30802691-30802778)
chr5 (88-233)||(4160383-4160527)
chr5 (145-233)||(16642209-16642295)
chr5 (162-233)||(35615921-35615992)
chr5 (91-233)||(316515-316655)
chr5 (148-233)||(10055040-10055125)
chr5 (180-229)||(14689774-14689822)
chr5 (89-146)||(16641215-16641272)
chr5 (148-232)||(30792990-30793073)
[»] chr2 (10 HSPs)
chr2 (84-233)||(1632002-1632151)
chr2 (84-233)||(42288380-42288528)
chr2 (84-226)||(35447154-35447295)
chr2 (84-233)||(45726679-45726827)
chr2 (88-233)||(24397806-24397952)
chr2 (124-233)||(7451049-7451158)
chr2 (88-233)||(17450340-17450485)
chr2 (88-233)||(33647918-33648064)
chr2 (177-233)||(24197648-24197703)
chr2 (155-233)||(42261950-42262028)
[»] scaffold0014 (1 HSPs)
scaffold0014 (84-233)||(80553-80702)
[»] chr8 (11 HSPs)
chr8 (84-233)||(11383735-11383884)
chr8 (84-233)||(42435261-42435410)
chr8 (84-233)||(40328528-40328677)
chr8 (84-233)||(40221494-40221643)
chr8 (84-233)||(44353541-44353690)
chr8 (84-186)||(4283320-4283422)
chr8 (126-233)||(22976283-22976389)
chr8 (123-233)||(2999829-2999939)
chr8 (157-201)||(3817675-3817720)
chr8 (149-233)||(3846153-3846236)
chr8 (84-137)||(18655246-18655299)
[»] chr6 (11 HSPs)
chr6 (84-233)||(2973209-2973358)
chr6 (84-233)||(603350-603499)
chr6 (88-233)||(21593415-21593560)
chr6 (84-233)||(17762736-17762887)
chr6 (86-233)||(5043377-5043523)
chr6 (84-233)||(3808978-3809128)
chr6 (84-229)||(17757835-17757982)
chr6 (84-233)||(26830394-26830543)
chr6 (88-233)||(22425099-22425246)
chr6 (123-228)||(26800525-26800629)
chr6 (81-143)||(5741057-5741119)
[»] scaffold0286 (1 HSPs)
scaffold0286 (87-233)||(11307-11453)
[»] scaffold0176 (1 HSPs)
scaffold0176 (84-233)||(18271-18420)
[»] scaffold0002 (1 HSPs)
scaffold0002 (155-233)||(490785-490863)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 46569752 - 46569965
Alignment:
Q  20 ctcaatcttcttgtatttaatagtttgttataaaatgcattatactaatgtaaatgtattatgattcactaaggatcttctcttttagtttcacaagatt 119  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| ||||||    
T  46569752 ctcaatcttcttgcatttaatagtttgttataaaaagcattatgctaatgtaaatgtattatgattcaataaggaccttctcttttggtttcataagatt 46569851  T
Q  120 catccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctctttt 219  Q
    || | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  46569852 cacctaagttgttcacaaaagactttccactcatttgtttcccaaccccatgaatctttcccaaaaggcaccaatccttttcacaagagccccctctttt 46569951  T
Q  220 ggttctccaagatt 233  Q
    ||||||||||||||    
T  46569952 ggttctccaagatt 46569965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 8665305 - 8665156
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||| | ||||| |||||||||||||||||||||||    
T  8665305 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatcttccccaa 8665206  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  8665205 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 8665156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 8648036 - 8647887
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||| ||||||| | ||||| |||||||||||||||||||||||    
T  8648036 ttcactaaggatcttctcttttgatttcacaagactcacccaagttgctcacaaaagactctccactcctgtgtttcccaaccccatgaatcttccccaa 8647937  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  8647936 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 8647887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 26364163 - 26364014
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||| ||||    
T  26364163 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaa 26364064  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  26364063 aaggccccaacccttttcacaagagccccctcttttggttctccaagatt 26364014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 40630878 - 40630733
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  40630878 ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaagg 40630779  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| ||  |||||||||||||||||||||||    
T  40630778 caccaacccttttcacaaaagctccctcttttggttctccaagatt 40630733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 50674116 - 50674265
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| ||||     
T  50674116 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctttcccat 50674215  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  50674216 aaggcaccaacccttttcattagagccccctcttttggttctccaagatt 50674265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 55085635 - 55085784
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| |||  ||||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||||||||    
T  55085635 ttcactaaggatcttctcttttggtttcacaagactcacacaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaa 55085734  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  55085735 aaggcaccaaccctttccccaagagccccctcttttggttctccaagatt 55085784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 35662336 - 35662191
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| |||||||  ||| |||| |||| |||||||||||||||||||||||||||||||||    
T  35662336 ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaagaactctccattcatgtgttttccaaccccatgaatcttccccaaaagg 35662237  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||  ||||| ||||||||||||||||||||||||    
T  35662236 caccaacccttttcctaagagccccctcttttggttctccaagatt 35662191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 50262968 - 50263117
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||| ||||||||||| ||||||||||| ||| | | |||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  50262968 ttcactaagggtcttctcttttggtttcacaagagtcaccgaggttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 50263067  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  50263068 aaggcaccaaccctttttccaagagccccctcttttggttctccaagatt 50263117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 54882918 - 54882769
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||| ||| ||| |||||||  |||||||||||| | ||||||| ||||| |||||||||||||||||| ||||    
T  54882918 ttcactaaggatcttctcttttggtttcacgagactcacccaagtttctcacaaaagactctacactcatgtgtttcccaaccccatgaatcttctccaa 54882819  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  54882818 aaggcaccaacccttttcataagagccccctcttttggttctccaagatt 54882769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 6655851 - 6655705
Alignment:
Q  87 actaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaag 186  Q
    ||||| ||||||||||||| ||||||||||| ||| |||||||| ||| ||| |||| ||||||||| ||||| |||||||||||||||||| |||||||    
T  6655851 actaatgatcttctcttttggtttcacaagactcacccaagttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaag 6655752  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||    
T  6655751 gcaccaaccctttccccaagagccccctcttttggttctccaagatt 6655705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 12073290 - 12073142
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| |||||| |||| ||| |||||||| |||||||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  12073290 ttcactaaggatcttctcttttggtttcataagactcacccaagttgctcacaaaagactcttcactcatgtgttttccaaccccatgaatctt-cccaa 12073192  T
Q  184 aaggcaccaaccc-ttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  12073191 aaggcaccaaccctttttcccaagag-cccctcttttggttctccaagatt 12073142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 41964313 - 41964166
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| || |||||| ||||| ||||||||||||||||| |||||    
T  41964313 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctctactcatgtgtttcccaaccccatgaatctttcccaa 41964214  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||  || |||||||||| |||||| ||||||||||||||||||||||||    
T  41964213 aag--actaacccttttcccaagagccccctcttttggttctccaagatt 41964166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 379273 - 379128
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    ||||||||||||||||||  |||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| |||  | ||||||||||||||||||||    
T  379273 ctaaggatcttctcttttgatttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccattctcatgaatcttccccaaaagg 379174  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||    
T  379173 caccgacccttttcacaagagccccctcttttggttctccaagatt 379128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 46703394 - 46703250
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||| ||||||||| ||||||||||| ||| |||||||| | |||||||||| |||| |||| | ||| ||| |||||||||||||||||||||||    
T  46703394 ctaaggattttctcttttggtttcacaagactcacccaagttgctgacaaaagactctccattcatgt-tttcccatccccatgaatcttccccaaaagg 46703296  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||| |||||| ||||||||||| ||||| ||||||    
T  46703295 caccaacccttttcccaagagccccctcttttgattctcgaagatt 46703250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 140 - 233
Target Start/End: Complemental strand, 2209550 - 2209457
Alignment:
Q  140 gactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  2209550 gactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggcaccaacccttttcccaagagtcccctcgtttggttctccaagatt 2209457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 33989756 - 33989612
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| |||||| |||| ||| |||||||| ||||||| |||| ||||||||| ||||| |||| |||||||||||  |||||||||    
T  33989756 ctaaggatcttctcttttggtttcaaaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaatcccatgaatctctcccaaaagg 33989657  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||| |||| || |||||| ||||| |||||||||| |||||||    
T  33989656 caccaa-ccttctcccaagagccccctattttggttcttcaagatt 33989612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 27417273 - 27417370
Alignment:
Q  136 aaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| |||||| ||| ||||||||||||||||||||    
T  27417273 aaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaagacaccaacccctttcccaagagccccttcttttggttctccaagatt 27417370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 34112506 - 34112392
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    ||||||||||||  ||||  |||  |||||||||||||||||| ||||| | |||| ||||||||| |||||||||||||| |||| || ||||||||||    
T  34112506 ctaaggatcttcagttttgtttttccaagattcatccaagttgctcacagatgactctccactcatgtgttttccaaccccgtgaacctctccccaaaag 34112407  T
Q  187 gcaccaacccttttc 201  Q
    |||||||||||||||    
T  34112406 gcaccaacccttttc 34112392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 12119432 - 12119289
Alignment:
Q  89 taaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggc 188  Q
    ||||||||||||||||| |||||||||||  || |||| ||| ||||||| || |  ||||| || |||||  ||||||||||||||||||| ||| ||     
T  12119432 taaggatcttctcttttggtttcacaagacacacccaaattgctcacaaatgattcaccactaatgtgtttcgcaaccccatgaatcttcccaaaaggga 12119333  T
Q  189 accaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||| |||| ||||||| |||| ||||  ||||||||||||    
T  12119332 accaaccc-tttcccaagagttcccttttttaattctccaagatt 12119289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 33089758 - 33089648
Alignment:
Q  123 ccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttgg 221  Q
    |||||||| ||||||| |||| ||||||||| |||||| | ||||||||||||| || ||||||| ||||||||| | || |||||| |||||||||||     
T  33089758 ccaagttgctcacaaatgactctccactcatgtgtttttcgaccccatgaatctctctccaaaagacaccaaccc-tctcccaagagccccctcttttga 33089660  T
Q  222 ttctccaagatt 233  Q
    ||||||||||||    
T  33089659 ttctccaagatt 33089648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 10071676 - 10071634
Alignment:
Q  191 caacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  10071676 caacccttttcacaagagccccctcttttggttctccaagatt 10071634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 10072065 - 10072020
Alignment:
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  10072065 caccaacccttttcacaagagccccctcttttagttctccaagatt 10072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 3785891 - 3785840
Alignment:
Q  181 caaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| |||||||    
T  3785891 caaaaggcaccaacccttttc-caagagccccctcttttggttcttcaagatt 3785840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 38811405 - 38811497
Alignment:
Q  140 gactttccactcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| |||||| || ||||| | |||| ||||||||| ||| |||||| |||||||||||| | |||||| ||||||||| ||||||||||||||    
T  38811405 gactctccacttatgtgtttcctaacctcatgaatctctccgcaaaagacaccaaccctttcc-caagag-cccctctttgggttctccaagatt 38811497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 2209611 - 2209578
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaaga 117  Q
    |||||||||||||||||||||| |||||||||||    
T  2209611 ttcactaaggatcttctcttttggtttcacaaga 2209578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 8653385 - 8653349
Alignment:
Q  197 ttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  8653385 ttttcccaagagccccctcttttggttctccaagatt 8653349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 7223 - 7077
Alignment:
Q  87 actaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaag 186  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  7223 actaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaatcttccccaaaag 7124  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  7123 gcaccaacccttttcacaagagccccctcttttggttctccaagatt 7077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 37168195 - 37168046
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  37168195 ttcactaaggatcttctcttttagtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 37168096  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37168095 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 37168046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 29136145 - 29135997
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||| ||| ||||||||| | |||||||||||||||||||||||||||    
T  29136145 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaaaactctccactcatgt-ttttccaaccccatgaatcttccccaa 29136047  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29136046 aaggcaccaacccttttcccaagagtcccctcttttggttctccaagatt 29135997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 34603470 - 34603325
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  34603470 ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagacttttcactcatgtgttttccaaccccatgaatcttccccaaaagg 34603371  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||| ||||||  |||||||||||||||||||||||    
T  34603370 caccaacccttttcccaagagctccctcttttggttctccaagatt 34603325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 34602613 - 34602758
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  34602613 ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagacttttcactcatgtgttttccaaccccatgaatcttccccaaaagg 34602712  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||  ||||||  |||||||||||||||||||||||    
T  34602713 caccaacccttttaccaagagctccctcttttggttctccaagatt 34602758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 7482504 - 7482650
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  7482504 ctaaggatcttctctttttgtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaagg 7482603  T
Q  188 caccaacccttttcacaagag-tcccctcttttggttctccaagatt 233  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||    
T  7482604 caccaacccttttcccaagagcccccctcttttggttctccaagatt 7482650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 11348596 - 11348447
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||| ||||    
T  11348596 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgttttccaaccccatgaatcttctccaa 11348497  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||  ||||||| |||||| ||||||||||||||||||||||||    
T  11348496 aaggcaccagaccttttcccaagagccccctcttttggttctccaagatt 11348447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 13547359 - 13547508
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||| |||    
T  13547359 ttcactaagtatcttctcttttggtttcacaagattcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaattttcctcaa 13547458  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||| ||||||||||||||||  ||||||||||||| |||||||||    
T  13547459 aaggcaccgacccttttcacaagagctccctcttttggttatccaagatt 13547508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 13549270 - 13549419
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||| |||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||| |||| |||    
T  13549270 ttcactaagtatcttctcttttggtttcacaagattcacccaagttgctcacaaaagactctccactcatgtgttttccaaccccatgaattttcctcaa 13549369  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||| ||||||||||||||||  ||||||||||||| |||||||||    
T  13549370 aaggcaccgacccttttcacaagagctccctcttttggttatccaagatt 13549419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 37033343 - 37033492
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| |||||| |||||||||||| |||    
T  37033343 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaacctcatgaatcttcctcaa 37033442  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  37033443 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 37033492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 37879181 - 37879330
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||| ||||||||    
T  37879181 ttcactaaggatcttctcttttgatttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaattttccccaa 37879280  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||| |||||||||||| |||||||||| |||||||||||||    
T  37879281 aaggcaccaacctttttcacaagagccccctctttttgttctccaagatt 37879330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 42298245 - 42298394
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||| ||||||||||||||| ||||||||||| ||| |||||||| || |||| |||| ||||||||| ||||| |||||||||||||||||| ||||    
T  42298245 ttcacttaggatcttctcttttggtttcacaagactcacccaagttgctcgcaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaa 42298344  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42298345 aaggcaccaacccttttcacaagagccccctcttttggttctccaagatt 42298394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 19754384 - 19754240
Alignment:
Q  89 taaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggc 188  Q
    ||||||| ||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  19754384 taaggattttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaaaaggc 19754285  T
Q  189 accaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||    
T  19754284 accaacccttttcacaagagccccctctcttggttttccaagatt 19754240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 193509 - 193361
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| | ||| ||| ||||| ||||||||||||||||| |||||    
T  193509 ttcactaaggatcttctcttttggtttcacaagactcatccaagttgctcacaaaagactcttcacacatgtgtttcccaaccccatgaatctt-cccaa 193411  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||| ||| | |||||| ||||||||||||||||||||||||    
T  193410 aaggcaccaaccttttccccaagagccccctcttttggttctccaagatt 193361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 19752583 - 19752435
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||| ||| ||||||||| ||||| ||||| | |||||||||||||||    
T  19752583 ttcactaaggatcttctcttttggtttcacaagactcatctaagttgctcacaaaatactctccactcatgtgtttcccaactcaatgaatcttccccaa 19752484  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||| |||||||| ||||| ||| ||||||||||||||||||||    
T  19752483 aaggcaccaa-ccttttcataagagccccatcttttggttctccaagatt 19752435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 28242286 - 28242138
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||| ||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| ||||||  ||||||||| |||||    
T  28242286 ttcactaaggatattctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccttatgaatctt-cccaa 28242188  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  28242187 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 28242138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 47115069 - 47114921
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| |||| |||| ||||| ||||||||||||||||| |||||    
T  47115069 ttcattaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccattcatgtgtttcccaaccccatgaatctt-cccaa 47114971  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  47114970 aaggtaccaaccctgttcccaagagccccctcttttggttctccaagatt 47114921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 31925976 - 31926099
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||  ||| |||||||| |||||||||| | ||||||||  ||||| |||| ||||||||||||||||||    
T  31925976 ttcactaaggatcttctcttttggtttcacaagtctcacccaagttgctcacaaaagattctccactcacgtgtttcccaaacccatgaatcttccccaa 31926075  T
Q  184 aaggcaccaacccttttcacaaga 207  Q
    ||||||||||||||||||||||||    
T  31926076 aaggcaccaacccttttcacaaga 31926099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 47255610 - 47255753
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||| |||| |||| ||||| |||| ||||||||||||||||||    
T  47255610 ttcactaaggatcttctcttttggtttcacaagactca-ctaagttgctcacaaaagactctccaatcatgtgtttcccaa-cccatgaatcttccccaa 47255707  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||    ||||| |||||| ||| ||||||||||||||||||||    
T  47255708 aaggcacca----ttttcccaagagccccatcttttggttctccaagatt 47255753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 4535783 - 4535861
Alignment:
Q  123 ccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaaggcaccaaccctttt 200  Q
    |||||||| ||||||| |||| ||||||||| |||||| ||||||||||||||| | |||||||| |||||||||||||    
T  4535783 ccaagttgctcacaaacgactatccactcatgtgtttttcaaccccatgaatctattcccaaaagacaccaaccctttt 4535861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 9109680 - 9109820
Alignment:
Q  93 gatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaaggcacc 191  Q
    |||||||| ||||  |||| ||||| |||||||| ||| |||||||||||| ||   | || ||| | |||||| ||||||||| |||||||||| || |    
T  9109680 gatcttctattttgatttcccaagactcatccaaattgctcacaaaagactctcatttgatgtgtctcccaacctcatgaatctctccccaaaagacatc 9109779  T
Q  192 aacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||| | | || ||||||||| ||||||||||||||||||    
T  9109780 aaccctctcc-catgagtccccttttttggttctccaagatt 9109820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 197
Target Start/End: Complemental strand, 41135709 - 41135605
Alignment:
Q  93 gatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaaggcacc 191  Q
    ||||||||||||| |||||  |||| ||| |||||||  ||||||| |||| |||  | || ||||| |||||||||||||||| |||| ||||||||||    
T  41135709 gatcttctcttttggtttcctaagactcacccaagtttctcacaaa-gactctcctttgatgtgtttcccaaccccatgaatctctccctaaaaggcacc 41135611  T
Q  192 aaccct 197  Q
    ||||||    
T  41135610 aaccct 41135605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 16216769 - 16216911
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    |||||||||||||||||||  ||  ||| |||||  ||||||| ||||||  |||| ||| ||||| ||||| ||||| | |||||| | |  ||||||     
T  16216769 ctaaggatcttctcttttaagttttcaaaattcactcaagttgctcacaat-gactctcctctcatgtgtttgccaacac-atgaatttctatccaaaat 16216866  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagat 232  Q
    |||||||||||||||  ||||| |||||||||||||||| ||||||    
T  16216867 gcaccaacccttttcg-aagagccccctcttttggttcttcaagat 16216911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 43404003 - 43404152
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||| || |||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  43404003 ttcactaaggatcttctcttttagtttcacaagactcacccaagttgctcccaaatgactctccactcatgtgttttccaaccccatgaatcttccccaa 43404102  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  43404103 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 43404152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 6095869 - 6096018
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||||||||    
T  6095869 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaa 6095968  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  6095969 aaggcaccaacccttttcaaaagagccccctcttttggttctccaagatt 6096018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 49199740 - 49199890
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatcc-aagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttcccca 182  Q
    |||||||||||||||||||||| ||||||||||| ||| || |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  49199740 ttcactaaggatcttctcttttggtttcacaagactcaacccaagttgctcacaaaagactctccactcatatgtttcccaaccccatgaatcttcccca 49199839  T
Q  183 aaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  49199840 aaaggcaccaacccttttcacaatagccccctcttttggttctccaagatt 49199890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 30236023 - 30235874
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||| ||| ||||||| |||| ||||||| | |||||||||||||||||||| ||||||||    
T  30236023 ttcactaaggatcttctcttttggtttcacaagactcacccaacttgctcacaaatgactctccactcttgtgttttccaaccccatgaatattccccaa 30235924  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30235923 aaggcaccaacccttttcacaagagccccctcttttggttctccaagatt 30235874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 34491111 - 34490962
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| |||||| |||| |||||||||||| ||||    
T  34491111 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttttcaactccatgaatcttctccaa 34491012  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34491011 aaggcaccaacccttttcacaagagccccctcttttggttctccaagatt 34490962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 43402060 - 43402209
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| | | |||||||||||||||| || | ||||||||| ||||| |||||||||||||||||||||||    
T  43402060 ttcactaaggatcttctcttttggtttcacaagacttacccaagttgttcacaaatgattctccactcatgtgtttcccaaccccatgaatcttccccaa 43402159  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  43402160 aaggcaccaacccttttctcaagagccccctcttttggttctccaagatt 43402209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 54593603 - 54593454
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||||||||||| |||| ||||||||||| |||  ||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  54593603 ttcactaaggatcttctattttggtttcacaagactcactcaagttgctcacaaaagactctccactcatgtgttttccatccccatgaatcttccccaa 54593504  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  54593503 aaggtaccaacccttttcccaagagccccctcttttggttctccaagatt 54593454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 46860365 - 46860220
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| ||| ||| |||||||||||||||||||    
T  46860365 ctaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccatccctatgaatcttccccaaaagg 46860266  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  46860265 caccaacccttttcccaagagccccctcttttggttctccaagatt 46860220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 47304149 - 47304001
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||| ||||||||| |||| |||||| ||| | |||||| |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||    
T  47304149 ttcactaaggatattctcttttggttttacaagactcacctaagttgctcacaaaa-actctccactcatgtgtttcccaaccccatgaatcttccccaa 47304051  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  47304050 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 47304001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 55302235 - 55302384
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| |||  ||||||| |||||||||| | ||||||||| |||||||||||| ||||||| || |||||    
T  55302235 ttcactaaggatcttctcttttggtttcacaagactcactcaagttgctcacaaaagaatctccactcatgtgttttccaacctcatgaatttttcccaa 55302334  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  55302335 aaggcaccaacccttttcccaagagctccctcttttggttctccaagatt 55302384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 40913237 - 40913087
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttc-ccca 182  Q
    ||||||||||||||||||||||  |||||||||| ||| |||| ||| ||||||| |||| ||||||||| ||||| |||||||||||||||||| || |    
T  40913237 ttcactaaggatcttctcttttgctttcacaagactcacccaatttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaa 40913138  T
Q  183 aaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  40913137 aaaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 40913087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 36018749 - 36018600
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| |||| |||| ||||| ||| ||||||| |||||||||||    
T  36018749 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccattcatgtgtttcccatccccatggatcttccccaa 36018650  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| ||| ||  |||||||||||||||||||||||    
T  36018649 aaggcaccaacccttttcccaaaagctccctcttttggttctccaagatt 36018600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 4569849 - 4569700
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||| |||| |||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  4569849 ttcactaaagatcatctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 4569750  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
     ||||||   |||||||| |||||| ||||||||||| ||||||||||||    
T  4569749 taggcacacccccttttcccaagagccccctcttttgattctccaagatt 4569700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 41819801 - 41819940
Alignment:
Q  93 gatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcacca 192  Q
    ||||||||||||| |||||| |||| |||  ||||||| ||||||| || | ||||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  41819801 gatcttctcttttggtttcataagactcactcaagttgctcacaaatgagtctccactcatgtgtttcccaaccccatgaatctt-cccaaaaggcacca 41819899  T
Q  193 acccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  41819900 acccttttcccaagagccccctcttttggttctctaagatt 41819940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 5434152 - 5434289
Alignment:
Q  89 taaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaagg 187  Q
    ||||||||||||||||| ||||| ||||| ||| |||| ||| |||||||||||| ||||||||| ||||| | |||||||||||||| |||| ||||      
T  5434152 taaggatcttctcttttggtttcccaagactcacccaacttgctcacaaaagactctccactcatgtgtttcctaaccccatgaatctctccctaaaaaa 5434251  T
Q  188 caccaacccttttcacaagagtcccctcttttggttct 225  Q
    ||| |||||||||| |||||| ||||||||||||||||    
T  5434252 cactaacccttttcccaagagccccctcttttggttct 5434289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 199
Target Start/End: Complemental strand, 1683382 - 1683270
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    |||||||||||||||||| || |||||||| ||| | |||||| ||| ||| || | ||||||||| |||||||||||||||||||||| | |||||||     
T  1683382 ctaaggatcttctcttttggtctcacaagactcaccaaagttgctcataaatgattatccactcatgtgttttccaaccccatgaatctcttcccaaaat 1683283  T
Q  187 gcaccaacccttt 199  Q
    |||||||||||||    
T  1683282 gcaccaacccttt 1683270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 28074488 - 28074366
Alignment:
Q  110 tcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagt 209  Q
    |||||||| ||| | |||||  || ||| ||||| ||||||||| ||||| ||| ||||||||||||||||||||| ||||||| |  |||| ||||||     
T  28074488 tcacaagactcacctaagtttctctcaatagactctccactcatgtgtttcccatccccatgaatcttccccaaaacgcaccaa-ctatttcccaagagc 28074390  T
Q  210 cccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||    
T  28074389 cccctcttttggttctccaagatt 28074366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 31340448 - 31340495
Alignment:
Q  186 ggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  31340448 ggcaccaaccattttcccaagagccccctcttttggttctccaagatt 31340495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 35138980 - 35139091
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    ||||||||||||| |||| || || ||||| |||| ||||||| ||| ||| |||| ||   | ||||||||||||||| ||||||||| ||| ||||||    
T  35138980 ctaaggatcttctattttggtctcccaagactcattcaagttgctcataaa-gactctcatttgatttgttttccaacctcatgaatctctcctcaaaag 35139078  T
Q  187 gcaccaacccttt 199  Q
    ||| |||||||||    
T  35139079 gcatcaacccttt 35139091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 39127386 - 39127308
Alignment:
Q  155 tgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||| |||||| ||||||||| |||| ||||||||||||| || ||| |||||||||||| |||| |||||| ||||||    
T  39127386 tgtttcccaacctcatgaatctctcccaaaaaggcaccaactctcttc-caagagtcccctattttagttctctaagatt 39127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 1737257 - 1737308
Alignment:
Q  181 caaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||| ||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  1737257 caaaagacacgaacccttttc-caagagtccgctcttttggttccccaagatt 1737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 36796279 - 36796168
Alignment:
Q  114 aagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtccc 212  Q
    |||||||| |||||||| | || || |||| ||||||| | ||| | || ||||| ||||||| |||||||||   ||| ||| |||||| |||||||||    
T  36796279 aagattcacccaagttgctaaccaatgactctccactcttgtgtctcccgaccccgtgaatctctccccaaaatcaaccgacctttttca-aagagtccc 36796181  T
Q  213 ctcttttggttct 225  Q
    |||||||||||||    
T  36796180 ctcttttggttct 36796168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 6431869 - 6431720
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  6431869 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctacactcatgtgttttccaaccccatgaatcttccccaa 6431770  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  6431769 aaggcaccaaccctttccccaagagccccctcttttggttctccaagatt 6431720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 34310986 - 34311135
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||||||| ||||||||| |||||||||    
T  34310986 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgttttccatccccatgaaccttccccaa 34311085  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  34311086 aaggcaccaacccttttcccaagagccccctcttttggttctccaagatt 34311135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 2390180 - 2390031
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2390180 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactatccactcatgtgttttccaaccccatgaatcttccccaa 2390081  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||| |||||||||||||| ||| || |||||||||||||| |||||||||    
T  2390080 aagccaccaacccttttcgcaatagccccctcttttggttttccaagatt 2390031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 48599604 - 48599744
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| || |||||| | |||||||||||||||||||||||||||    
T  48599604 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctctactcatgttttttccaaccccatgaatcttccccaa 48599703  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttc 224  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  48599704 aaggcaccaacccttttcacaagagccccctcttttggttc 48599744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 2361241 - 2361390
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| |||||| |||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||| |||||||    
T  2361241 ttcactaaggatcttctcttttggtttcataagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcatccccaa 2361340  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||    
T  2361341 aaggcaccaacccttttcacaagagccccctcttttgattcttcaagatt 2361390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 4512660 - 4512808
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||| ||||||||| ||||| | |||||||||||||||||||||    
T  4512660 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatcttccccaa 4512759  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||| |||| |||||| ||||||||||||||||| ||||||    
T  4512760 aaggcaccaaccc-tttcccaagagccccctcttttggttctctaagatt 4512808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 3258890 - 3258745
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| | | |||||||| ||||||||| ||||| ||| |||||||||||||||||||||||    
T  3258890 ctaaggatcttctcttttggtttcacaagactcacccaagttgctaataaaagactctccactcatatgtttcccatccccatgaatcttccccaaaagg 3258791  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||| |||||| ||| |||||| |||||||||||||    
T  3258790 caccaacccttttcccaagagccccatctttttgttctccaagatt 3258745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 29608634 - 29608490
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||| ||||||| |||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||     ||||    
T  29608634 ttcactaagaatcttctattttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaat-----ccaa 29608540  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29608539 aaggcaccaacccttttcacaagagccccctcttttggttctccaagatt 29608490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 8359588 - 8359703
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  8359588 ttcactaaggattttctcttttggtttcacaagactcatccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 8359687  T
Q  184 aaggcaccaacccttt 199  Q
    ||||||||||||||||    
T  8359688 aaggcaccaacccttt 8359703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 4510818 - 4510959
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||||||||    
T  4510818 ttcactaaggatcttctcttttggtttcacaagactcaccaaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaa 4510917  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctc 226  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||    
T  4510918 aaggcaccaaccc-tttcccaagagctccctcttttggttctc 4510959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 6360182 - 6360331
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||||||||||||||||  |||||||||| ||| |||||||| ||||||| |||| ||||||||| |||||| |||| ||||||||||||  |||    
T  6360182 ttcactaaggatcttctcttttgatttcacaagactcacccaagttgctcacaaatgactctccactcatgtgtttttcaactccatgaatcttcttcaa 6360281  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||  ||||||| |||||| ||||||||||||||||||||||||    
T  6360282 aaggcaccattccttttctcaagagccccctcttttggttctccaagatt 6360331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 4508976 - 4509117
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||||||||| |||||| ||||||||||| ||| | |||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||||||||    
T  4508976 ttcactaaggatcttatcttttggtttcacaagactcaccaaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttccccaa 4509075  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctc 226  Q
    ||||||||||||| |||| ||||||  ||||||||||||||||    
T  4509076 aaggcaccaaccc-tttcccaagagctccctcttttggttctc 4509117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 233
Target Start/End: Original strand, 22328673 - 22328818
Alignment:
Q  89 taaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaagg 187  Q
    ||||||| ||||||||||||||| ||||||||| |||||||| ||||||| |||| || |||||| | ||| ||||||| |||||||| |||||||||||    
T  22328673 taaggatattctcttttagtttcccaagattcacccaagttgctcacaaatgactctctactcatgtttttcccaaccctatgaatctctccccaaaagg 22328772  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||| ||||||  ||||| ||||||||||||||||||||||||    
T  22328773 caccaactcttttcctaagagccccctcttttggttctccaagatt 22328818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 22269871 - 22269724
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||||||||||| |||| ||||||||||| ||| |||||||  || ||| ||||| ||||||||| ||||| ||  |||||||||||||||||||    
T  22269871 ttcactaaggatcttctattttggtttcacaagactcacccaagtttctctcaatagactctccactcatgtgtttcccctccccatgaatcttccccaa 22269772  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||| | |||| |||||| ||||||||||||||||||||||||    
T  22269771 aaggcaccaactc-tttcccaagag-cccctcttttggttctccaagatt 22269724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 32358189 - 32358255
Alignment:
Q  167 ccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32358189 ccatgaattttccccaaaaggcaccaacccttttcacaagagccccctcttttggttctccaagatt 32358255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 22552782 - 22552856
Alignment:
Q  158 tttccaaccccatgaatcttc-cccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||  |||||||||||  ||||||||||||||||| ||| ||  |||| ||||||||||||||||| ||||||    
T  22552782 tttccaaagccatgaatcttttcccaaaaggcaccaaccgtttcca--agagccccctcttttggttctctaagatt 22552856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 40147159 - 40147010
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  40147159 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 40147060  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||||    
T  40147059 aaggcaccaaccattttcccaagagccccctcttttggttctccaagatt 40147010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 27015430 - 27015281
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| |||| |||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||| ||||||||||    
T  27015430 ttcactaaggatcttctcttttggttttacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgattcttccccaa 27015331  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  27015330 aaggcaccaacccttttcacaagagccccctcttttggttcttcaagatt 27015281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 213367 - 213224
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||| ||||    
T  213367 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttctccaa 213268  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctcc 227  Q
    |||||||||||||||||| |||||| ||||||||||||||||||    
T  213267 aaggcaccaacccttttcccaagagccccctcttttggttctcc 213224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 38746903 - 38746754
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||||| || |||| |||| ||||||||  ||||| |||||||||||||||||||||||    
T  38746903 ttcaataaggatcttctcttttggtttcacaagactcacccaagttgctcgcaaatgactctccactcacgtgtttcccaaccccatgaatcttccccaa 38746804  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  38746803 aaggcaccaacccttttcttaagagccccctcttttggttctccaagatt 38746754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 5057942 - 5057797
Alignment:
Q  87 actaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaag 186  Q
    ||||||||||||||||||| ||||||||||| ||  |||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  5057942 actaaggatcttctcttttggtttcacaagactcgcccaagttgctcacaaatgactctccactcatgtgttttccaaccccatgaatcttccccaaaag 5057843  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||| ||||| ||| || ||||||||||||||||| ||||||    
T  5057842 gcaccaacctttttcccaaaag-cccctcttttggttctcaaagatt 5057797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 28278214 - 28278064
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||  ||||||||||||  |||||||||| ||| |||||||| |||||| || || ||||||||| ||||| |||||||||||||||||||||||    
T  28278214 ttcactaacaatcttctcttttgatttcacaagactcacccaagttgctcacaatagtctctccactcatgtgtttcccaaccccatgaatcttccccaa 28278115  T
Q  184 aaggcaccaacccttttcacaagag-tcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| ||||||  ||||||||||||||||||||||||    
T  28278114 aaggcaccaacccttttcccaagagcccccctcttttggttctccaagatt 28278064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 27637884 - 27638034
Alignment:
Q  84 ttcactaaggatcttctct--tttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttcccc 181  Q
    |||||||||||||||||||  ||| ||||||||||| ||| |||||||| ||| |||||||| | ||||||| ||||| | ||||||||||||||| |||    
T  27637884 ttcactaaggatcttctctcttttggtttcacaagactcacccaagttgctcataaaagactcttcactcatgtgtttcctaaccccatgaatctt-ccc 27637982  T
Q  182 aaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| ||||||||||||||| ||||||  |||||||||||||||||||||||    
T  27637983 aaaatgcaccaacccttttcccaagagctccctcttttggttctccaagatt 27638034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 33906303 - 33906447
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    |||||||||||||||||| ||||| ||||| ||| |||||||| |||| || | || |||  | || |||||  ||||||||||||||| ||||||||||    
T  33906303 ctaaggatcttctcttttggtttcccaagactcacccaagttgctcactaa-gtctctcctttgatgtgtttctcaaccccatgaatctctccccaaaag 33906401  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||| | || |||||| ||||| |||||||||| |||||||    
T  33906402 gcaccaaccc-tctcccaagagcccccttttttggttctacaagatt 33906447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 232
Target Start/End: Complemental strand, 30802778 - 30802691
Alignment:
Q  145 tccactcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagat 232  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||| ||||| |||| |||||| | ||||||||||||||| |||||    
T  30802778 tccactcatgtgttttctaaccccatgaatctctccccaaaaggcacaaaccc-tttcccaagagcctcctcttttggttctctaagat 30802691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 4160527 - 4160383
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    |||||||||||||||||| ||||| ||||||||| || ||||| ||||||| |||| |||||| |  || || ||||||| |||||||| ||||||||||    
T  4160527 ctaaggatcttctcttttggtttcccaagattcaccctagttgctcacaaatgactctccacttacgtg-ttcccaaccctatgaatctctccccaaaag 4160429  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
     |||  |||| | || |||||| |||||||||| |||||||| ||||    
T  4160428 acacttaccc-tctcccaagagccccctcttttagttctccaggatt 4160383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 16642209 - 16642295
Alignment:
Q  145 tccactcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||| ||||| | |||||||||||||| |||||||||||||||||||| |||| ||||||  ||||||||||||||| |||||||    
T  16642209 tccactcatgtgtttcctaaccccatgaatctgtccccaaaaggcaccaaccc-tttcccaagag--ccctcttttggttcttcaagatt 16642295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 35615992 - 35615921
Alignment:
Q  162 caaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||| |||||||||| ||||||||||||| || |||||| | |||||||||||||||||||||||||||||||    
T  35615992 caactccatgaatctctccccaaaaggcatcacccctttcc-caagagtcccctcttttggttctccaagatt 35615921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 316655 - 316515
Alignment:
Q  91 aggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaaggca 189  Q
    ||||| ||||||||| || || ||||||||| |||||||| ||||||| |||| ||   | || ||||| ||||||  |||||||| |||||||||||||    
T  316655 aggattttctcttttggtctcccaagattca-ccaagttgctcacaaa-gactctcttttgatgtgtttcccaaccttatgaatctctccccaaaaggca 316558  T
Q  190 ccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||| | | |||||| |||| |||||||||||||||||||    
T  316557 ccaaccctctcc-caagagcccccccttttggttctccaagatt 316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 10055040 - 10055125
Alignment:
Q  148 actcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||| ||||| |||||||| ||||||| |||||| |||||||||| ||||| | |||||| || |||||||||||||||||||||    
T  10055040 actcatgtgtttcccaaccccgtgaatctctccccataaggcaccaaacctttcc-caagagccctctcttttggttctccaagatt 10055125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 14689774 - 14689822
Alignment:
Q  180 ccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaa 229  Q
    ||||||||||||||||| ||||||||||  ||| ||||||||||||||||    
T  14689774 ccaaaaggcaccaaccc-tttcacaagaaccccttcttttggttctccaa 14689822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 16641215 - 16641272
Alignment:
Q  89 taaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttc 146  Q
    |||| |||||||||||| ||||||||||| ||| | |||||||||||||  |||||||    
T  16641215 taagtatcttctcttttggtttcacaagactcaccaaagttgttcacaattgactttc 16641272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 30793073 - 30792990
Alignment:
Q  148 actcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagat 232  Q
    |||||| ||||| |||||||||||||| | ||||||||||||||||||| ||||| ||| || | | | |||||||||||||||||    
T  30793073 actcatgtgtttcccaaccccatgaatatctccccaaaaggcaccaacc-ttttcccaa-agccacatattttggttctccaagat 30792990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 1632002 - 1632151
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  1632002 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 1632101  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||| ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  1632102 aagacaccaacccttttcacaagagccccctcttttggttccccaagatt 1632151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 42288380 - 42288528
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  42288380 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt-cccaa 42288478  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||| |||||||||||||||| |||||||    
T  42288479 aaggcaccaacccttttcccaagagccccctcttttggttcttcaagatt 42288528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 84 - 226
Target Start/End: Original strand, 35447154 - 35447295
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||| |||||||||||| |||| |||||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  35447154 ttcactaagtatcttctcttttggttttacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctttcccaa 35447253  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctc 226  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  35447254 aaggcaccaacccttttcacaagag-cccctcttttggttctc 35447295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 45726827 - 45726679
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| |||||||| || ||| |||||||| ||||||| |||| ||||||||| ||||| | |||||||||||||||||||||    
T  45726827 ttcactaaggatcttctcttttggtttcacatgactcacccaagttgctcacaaatgactctccactcatgtgtttccaaaccccatgaatcttccccaa 45726728  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||||||    
T  45726727 aaggcaccaaccc-tttcccaagagctccctcttttggttctccaagatt 45726679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 24397952 - 24397806
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    |||||||| ||||||||| ||||||||||| | | |||| ||| ||||||| |||| ||||||||| ||||| ||| ||| |||| ||| |||| |||||    
T  24397952 ctaaggatattctcttttggtttcacaagactaacccaaattggtcacaaatgactctccactcatgtgtttaccagcccgatgagtctctccctaaaag 24397853  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||    
T  24397852 gcaccaacccttttcccaagagccccctcttttggttctccaagatt 24397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 124 - 233
Target Start/End: Complemental strand, 7451158 - 7451049
Alignment:
Q  124 caagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctcttttggtt 223  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||| ||||||| || ||||||||| |  ||||| ||||||||||||||    
T  7451158 caagttgctcacaaatgactctccactcatgtgttttccaaccccataaatcttctccaaaagtcatcaaccctttaccaaagagccccctcttttggtt 7451059  T
Q  224 ctccaagatt 233  Q
    ||||||||||    
T  7451058 ctccaagatt 7451049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 17450485 - 17450340
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactt-tccactcatttgttttccaaccccatgaatcttccccaaaag 186  Q
    |||| ||||||||||||| ||||||||||| ||| |||||||  ||||||  ||||  | | ||||| ||||| ||| ||||||||||||| | |||| |    
T  17450485 ctaatgatcttctcttttggtttcacaagactcacccaagtttctcacaattgactccttcgctcatgtgtttcccatccccatgaatctttcacaaagg 17450386  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||| | |||||| ||||||||||||||||||||||||    
T  17450385 gcaccaaccctttcc-caagagccccctcttttggttctccaagatt 17450340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 33648064 - 33647918
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct-tccccaaaag 186  Q
    |||||||||||||||||| |||| | |||| ||  | |||| | | ||||| |||| || |||||| |||||||||||| | ||||||| ||| ||||||    
T  33648064 ctaaggatcttctcttttggttttataagactcgcctaagtagctaacaaatgactctctactcatatgttttccaacctcgtgaatctctcctcaaaag 33647965  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||| |||||| | ||||||||| ||||||||||||    
T  33647964 gcaccaacccttttcccaagagcctcctcttttgattctccaagatt 33647918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 24197703 - 24197648
Alignment:
Q  177 tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||| ||||||||    
T  24197703 tccccaaaaggcaccaaccctctcc-caagagtcccctcttttggttccccaagatt 24197648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 42261950 - 42262028
Alignment:
Q  155 tgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||| |||| ||||||||||| || || ||||||||||||||| | || ||||| ||||| ||||||||||||||||||    
T  42261950 tgtttcccaatcccatgaatctctcacctaaaggcaccaaccctctcca-aagagcccccttttttggttctccaagatt 42262028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 80553 - 80702
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||| ||||||||||||| ||||| ||| |||||||| |||||||||||| ||| ||||| ||||| |||||||||||||||||||||||    
T  80553 ttcactaaggatctactcttttagtttcccaagactcacccaagttgctcacaaaagactctccgctcatgtgtttcccaaccccatgaatcttccccaa 80652  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  80653 aaggcaccaacccttttcataagagccccctcttttggttctccaagatt 80702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 11383884 - 11383735
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||| || | ||| ||||||||||||||||||| |||    
T  11383884 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactttccacttatgtatttcccaaccccatgaatcttcctcaa 11383785  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||    
T  11383784 aaggcaccaacccttttcacaatagccccctcttttggttctccaagatt 11383735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 42435261 - 42435410
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| |||  ||||||| |||||||||||| |||| |||| ||||| |||||||||||||||||||||||    
T  42435261 ttcactaaggatcttctcttttggtttcacaagactcactcaagttgctcacaaaagactctccattcatatgtttcccaaccccatgaatcttccccaa 42435360  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||| |||||||| ||||| |||||| ||||||||||||||||||||||||    
T  42435361 aagtcaccaacctttttcccaagagccccctcttttggttctccaagatt 42435410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 40328677 - 40328528
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||| ||||||||||||| ||||||||||| ||| |||||||| |||||||||||| | ||||||| ||||| ||| |||||||||||||||| ||    
T  40328677 ttcactaaagatcttctcttttggtttcacaagactcacccaagttgctcacaaaagactctacactcatgtgtttcccatccccatgaatcttccctaa 40328578  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  40328577 aaggcaccaacccttttcccaagaaccccctcttttggttctccaagatt 40328528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 40221643 - 40221494
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| |||| |||||| ||| | |||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  40221643 ttcactaaggatcttctcttttggttttacaagactcacctaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatcttccccaa 40221544  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||| ||||| |||| |||||| ||||| ||||||||||| ||||||    
T  40221543 aaggcactaacccctttcccaagagccccctattttggttctcgaagatt 40221494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 44353690 - 44353541
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||| ||||| |||||| ||||||||||| ||| |||||||| ||||  | |||| ||||||||| |||||||||||||||||||||||| ||||    
T  44353690 ttcactaagaatcttttcttttggtttcacaagactcacccaagttgctcaccgatgactctccactcatgtgttttccaaccccatgaatcttctccaa 44353591  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  44353590 aaggcaccaaccctcttcacaagagccccctcttttagttctccaagatt 44353541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 186
Target Start/End: Complemental strand, 4283422 - 4283320
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||  |||||||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  4283422 ttcactaaggatcttctcttttggtttcacaagactcaaccaagtttctcacaaaagactttccactcatgtgtttcccaaccccatgaatctttcccaa 4283323  T
Q  184 aag 186  Q
    |||    
T  4283322 aag 4283320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 22976389 - 22976283
Alignment:
Q  126 agttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctcttttggttct 225  Q
    ||||| |||||| ||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||  |||||| | ||||||||||||||    
T  22976389 agttgctcacaatagactcttcactcatgtgttttc-aaccccatgaatcttccccaaaaggcaccaaccctttttccaagagcctcctcttttggttct 22976291  T
Q  226 ccaagatt 233  Q
    ||||||||    
T  22976290 ccaagatt 22976283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 2999829 - 2999939
Alignment:
Q  123 ccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatctt-ccccaaaaggcaccaacccttttcacaagagtcccctcttttgg 221  Q
    |||||||| ||||||  |||| || |||||| |||||  || ||||||||||||| ||||||||| |||||||| | | | |||||  ||||||||||||    
T  2999829 ccaagttgctcacaattgactctctactcatgtgtttctcatccccatgaatctttccccaaaagacaccaaccatatcc-caagaaccccctcttttgg 2999927  T
Q  222 ttctccaagatt 233  Q
    ||||||||||||    
T  2999928 ttctccaagatt 2999939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 3817675 - 3817720
Alignment:
Q  157 ttttccaaccccatgaatcttcc-ccaaaaggcaccaacccttttc 201  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||    
T  3817675 ttttccaaccccatgaatctttctccaaaaggcaccaacccttttc 3817720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 3846153 - 3846236
Alignment:
Q  149 ctcatttgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||| ||||| |||||||||||||||| |||||||||| ||||||| |||||| |||||| | | |||||||||||| |||||||    
T  3846153 ctcatgtgtttcccaaccccatgaatctctccccaaaagacaccaactcttttc-caagag-ctcttcttttggttcttcaagatt 3846236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 18655299 - 18655246
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaa 137  Q
    ||||||||||||||||||||||  |||||||||| ||| | |||||| ||||||    
T  18655299 ttcactaaggatcttctcttttgatttcacaagactcaccgaagttgctcacaa 18655246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 8e-51; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 2973209 - 2973358
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| |||| | || |||| ||||| |||||||||||||||||||| ||    
T  2973209 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgttcacaaatgactctgcattcatgtgtttcccaaccccatgaatcttcccaaa 2973308  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    || |||||||||||||||||||||| ||||||||||||||||||||||||    
T  2973309 aaagcaccaacccttttcacaagagccccctcttttggttctccaagatt 2973358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 603350 - 603499
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| ||||||| |||  ||||||||| ||||| |||||||||||||||||| ||||    
T  603350 ttcactaaggatcttctcttttggtttcacaagactcacccaagttgctcacaaaggacactccactcatgtgtttcccaaccccatgaatcttctccaa 603449  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  603450 aaggcaccaaccctttcctcaagagccccctcttttggttctccaagatt 603499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 21593560 - 21593415
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||||||||||||| ||||||||||| ||| |||||||| ||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||||||    
T  21593560 ctaaggatcttctcttttggtttcacaagactcacccaagttgctcaaaaatgactctccactcatgtgttttccaaccccatgaatcttctccaaaagg 21593461  T
Q  188 caccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||    
T  21593460 caccaaccctttccccaagagccccctcttttggttctccaagatt 21593415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 17762887 - 17762736
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct--tcccc 181  Q
    |||||||||||||||||||||| ||||||||||| ||| |||||||| || ||||||||| ||||||||| ||||| ||||||||||||||||   ||||    
T  17762887 ttcactaaggatcttctctttttgtttcacaagactcacccaagttgctcccaaaagactctccactcatgtgtttcccaaccccatgaatctaaccccc 17762788  T
Q  182 aaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  17762787 aaaaggcaccaaaccttttcacaagagccccctcttttggttctccaagatt 17762736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 5043523 - 5043377
Alignment:
Q  86 cactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaa 185  Q
    |||||||||||||||||||| ||||||||||| ||| |||| ||| |||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||    
T  5043523 cactaaggatcttctcttttggtttcacaagactcacccaaattgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctt-cccaaaa 5043425  T
Q  186 ggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||    
T  5043424 ggcaccaacccttttcccaagagccctctcttttggttctccaagatt 5043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 3808978 - 3809128
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    |||||||||||| ||||||||| |||| |||||| ||| |||||||| ||||||| |||| ||||||||| ||||| |||||||||||||||||| ||||    
T  3808978 ttcactaaggattttctcttttggttttacaagactcacccaagttgctcacaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaa 3809077  T
Q  184 aaggcaccaacccttttcacaagag-tcccctcttttggttctccaagatt 233  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  3809078 aaggaaccaacccttttcacaagagcccccctcttttggttctccaagatt 3809128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 17757982 - 17757835
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatct--tcccc 181  Q
    |||||| | ||||||||||||| ||||||||||| ||| |||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||   ||||    
T  17757982 ttcactgatgatcttctctttttgtttcacaagactcacccaagttgctcacaaaagactctccactcatgtgtttcccaaccccatgaatctaaccccc 17757883  T
Q  182 aaaaggcaccaacccttttcacaagagtcccctcttttggttctccaa 229  Q
    |||| |||||||||||||||||||||| ||||| ||||||||||||||    
T  17757882 aaaatgcaccaacccttttcacaagagccccctattttggttctccaa 17757835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 26830394 - 26830543
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaa 183  Q
    ||||||||| |||||||||||| ||||||||||| ||  |||||||| ||||||| |||| | | ||||| ||||| |||||||||||||||||| ||||    
T  26830394 ttcactaagaatcttctcttttggtttcacaagactcgcccaagttgctcacaaatgactctgcgctcatctgtttcccaaccccatgaatcttctccaa 26830493  T
Q  184 aaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||| ||||| |||||| | ||||||||||||||||||||||    
T  26830494 aaggcaccaacctttttcccaagagactcctcttttggttctccaagatt 26830543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 22425099 - 22425246
Alignment:
Q  88 ctaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaagg 187  Q
    |||||||| ||||||||| ||||||||||| | | | |||||| ||  ||| |||| | ||| ||| |||||  |||||||||||||||||||||||| |    
T  22425099 ctaaggatattctcttttggtttcacaagactaaccgaagttgctcttaaatgactcttcacccatgtgtttcacaaccccatgaatcttccccaaaatg 22425198  T
Q  188 caccaacccttttcacaagag--tcccctcttttggttctccaagatt 233  Q
    ||||||||||| || ||||||   ||||||||||||||||||||||||    
T  22425199 caccaacccttatcccaagaggcccccctcttttggttctccaagatt 22425246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 228
Target Start/End: Complemental strand, 26800629 - 26800525
Alignment:
Q  123 ccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaaggcaccaacccttttcacaagagtcccctcttttggt 222  Q
    |||||||| || ||| ||||| ||||||||| ||||| ||| ||| ||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  26800629 ccaagttgctctcaatagactctccactcatgtgtttcccatccc-atgaatcttccccaaaaggcaccaacctttttcccaagagccccctcttttggt 26800531  T
Q  223 tctcca 228  Q
    | ||||    
T  26800530 tatcca 26800525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 5741057 - 5741119
Alignment:
Q  81 tgattcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagact 143  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||| |||| ||| ||||||||||||    
T  5741057 tgatttactaaggatcttcactttttgtttctcaagattcacccaaattgctcacaaaagact 5741119  T

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Target: scaffold0286 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 11453 - 11307
Alignment:
Q  87 actaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttccccaaaag 186  Q
    ||||| ||||||||||||| ||||||||||| ||| |||||||| ||| ||| |||| ||||||||| ||||| |||||||||||||||||| |||||||    
T  11453 actaatgatcttctcttttggtttcacaagactcacccaagttgctcagaaatgactctccactcatgtgtttcccaaccccatgaatcttctccaaaag 11354  T
Q  187 gcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||||||||||| | |||||| ||| ||||||||||||||||||||    
T  11353 gcaccaaccctttccccaagagccccatcttttggttctccaagatt 11307  T

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Target: scaffold0176 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 84 - 233
Target Start/End: Original strand, 18271 - 18420
Alignment:
Q  84 ttcactaaggatcttctcttttagtttcacaagattcatccaagttgttcacaaaagactttccactcatttgttttccaaccccatgaatcttcccc-a 182  Q
    |||||||||||||||||||||| |||| |||||| |||  ||||||| |||||||  ||| ||||||||| ||||||| |||| |||||||||||||| |    
T  18271 ttcactaaggatcttctcttttggttttacaagactcactcaagttgctcacaaataactctccactcatgtgttttc-aacctcatgaatcttccccca 18369  T
Q  183 aaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  18370 aaaggcaccaacccttttcacaagagccccctctttttgttctccaagatt 18420  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 233
Target Start/End: Original strand, 490785 - 490863
Alignment:
Q  155 tgttttccaaccccatgaatct-tccccaaaaggcaccaacccttttcacaagagtcccctcttttggttctccaagatt 233  Q
    ||||| |||| ||||||||||| || || ||||||||||||||| | || ||||| ||||| ||||||||||||||||||    
T  490785 tgtttcccaatcccatgaatctctcacctaaaggcaccaaccctctcca-aagagcccccttttttggttctccaagatt 490863  T

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