View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_high_6 (Length: 380)
Name: NF5208_high_6
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 4467658 - 4468009
Alignment:
| Q |
19 |
ctatatataattgttcatttttaaaacaaaagtgtaggtggagttttttgttttgttgaaatactatcactattatgtagaaagagaaagcaaaaatgta |
118 |
Q |
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| T |
4467658 |
ctatatataattgttcatttttaaaacaaaagtgtaggtggagttttttgttttgttgaaatactatcactattatgtagaaagagaaagcaaaaatgta |
4467757 |
T |
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| Q |
119 |
aaataacctggatttgatctccggcagtgattacaagtgcaccttgttcaggacagaaagtcaaccaacttttctttgagtaaacatgaaactctgaaga |
218 |
Q |
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| T |
4467758 |
aaataacctggatttgatctcccgcagtgattacaagtgcaccttgttcaggacagaaagtcaaccaacttttctttgagtaaacatgaaactctgaaga |
4467857 |
T |
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| Q |
219 |
gccatcacacacatgcaaacataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467858 |
gccatcacacacatgcaaacataaagaatgagagtaatcagttcccctaatcagcattctaatcacatcatatttcaaagaatcaacccaatgatcattc |
4467957 |
T |
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| Q |
319 |
ctattaatatcttgatgatgcttgtaaatgcaacaaagtgtcccaacttcat |
370 |
Q |
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| T |
4467958 |
ctattaatatcttgatgatgcttgtaaatgcaacaaagtgtcccaacttcat |
4468009 |
T |
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