View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5208_high_8 (Length: 351)

Name: NF5208_high_8
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5208_high_8
NF5208_high_8
[»] chr2 (10 HSPs)
chr2 (14-238)||(43796751-43796975)
chr2 (238-351)||(43797039-43797152)
chr2 (173-235)||(12238527-12238589)
chr2 (173-214)||(17317159-17317200)
chr2 (195-234)||(32522090-32522129)
chr2 (195-238)||(40301354-40301397)
chr2 (175-238)||(42839361-42839424)
chr2 (197-238)||(32366154-32366195)
chr2 (166-206)||(2401708-2401748)
chr2 (167-215)||(12223971-12224019)
[»] scaffold0004 (1 HSPs)
scaffold0004 (175-238)||(227688-227751)
[»] chr8 (27 HSPs)
chr8 (174-233)||(9781196-9781255)
chr8 (174-238)||(28280690-28280754)
chr8 (172-238)||(1184762-1184828)
chr8 (175-238)||(2669630-2669693)
chr8 (174-235)||(34286607-34286668)
chr8 (174-238)||(31079207-31079271)
chr8 (173-235)||(28879038-28879100)
chr8 (173-211)||(35168361-35168399)
chr8 (198-238)||(2563363-2563403)
chr8 (174-206)||(14942391-14942423)
chr8 (175-239)||(35453392-35453456)
chr8 (179-238)||(402129-402188)
chr8 (195-234)||(30973991-30974030)
chr8 (195-238)||(42102109-42102152)
chr8 (195-238)||(42363357-42363400)
chr8 (172-206)||(2563323-2563357)
chr8 (173-210)||(18396916-18396953)
chr8 (173-202)||(30973955-30973984)
chr8 (198-238)||(218293-218333)
chr8 (198-238)||(694853-694893)
chr8 (198-238)||(699062-699102)
chr8 (198-238)||(731916-731956)
chr8 (198-238)||(855812-855852)
chr8 (198-238)||(11988202-11988242)
chr8 (198-234)||(19925433-19925469)
chr8 (198-234)||(37410957-37410993)
chr8 (198-234)||(43577226-43577262)
[»] chr3 (13 HSPs)
chr3 (174-234)||(38524069-38524129)
chr3 (175-235)||(37601071-37601131)
chr3 (174-235)||(43376678-43376737)
chr3 (173-213)||(45331361-45331401)
chr3 (195-234)||(3645305-3645344)
chr3 (195-234)||(20894505-20894544)
chr3 (195-234)||(29614196-29614235)
chr3 (173-202)||(2086782-2086811)
chr3 (197-238)||(4257342-4257383)
chr3 (173-202)||(4974277-4974306)
chr3 (173-230)||(19307817-19307874)
chr3 (173-238)||(45049415-45049480)
chr3 (174-214)||(29270472-29270512)
[»] scaffold0091 (1 HSPs)
scaffold0091 (167-234)||(2624-2691)
[»] chr4 (19 HSPs)
chr4 (169-236)||(22397348-22397415)
chr4 (180-235)||(43983426-43983481)
chr4 (173-235)||(7148752-7148814)
chr4 (173-234)||(2141621-2141682)
chr4 (174-235)||(26206398-26206459)
chr4 (165-229)||(48591474-48591538)
chr4 (173-233)||(54412093-54412153)
chr4 (195-238)||(2702756-2702799)
chr4 (195-234)||(15184549-15184588)
chr4 (180-223)||(55852998-55853041)
chr4 (197-235)||(52700588-52700626)
chr4 (197-238)||(9201655-9201696)
chr4 (173-214)||(9319170-9319211)
chr4 (174-235)||(52274164-52274225)
chr4 (174-214)||(825663-825703)
chr4 (174-202)||(2702806-2702834)
chr4 (173-229)||(28663408-28663464)
chr4 (202-238)||(35010220-35010256)
chr4 (174-234)||(43136662-43136722)
[»] chr1 (18 HSPs)
chr1 (164-238)||(8410120-8410194)
chr1 (179-235)||(6337800-6337856)
chr1 (175-235)||(48819281-48819341)
chr1 (195-238)||(15235201-15235244)
chr1 (195-238)||(15791386-15791429)
chr1 (168-230)||(28870199-28870261)
chr1 (204-238)||(29333428-29333462)
chr1 (195-236)||(37148136-37148177)
chr1 (195-236)||(37156961-37157002)
chr1 (195-238)||(22088452-22088495)
chr1 (195-238)||(32497312-32497355)
chr1 (195-238)||(51162271-51162314)
chr1 (172-214)||(37431145-37431187)
chr1 (197-238)||(41003391-41003432)
chr1 (198-238)||(32810875-32810915)
chr1 (179-215)||(38781059-38781095)
chr1 (174-214)||(45267446-45267486)
chr1 (175-238)||(51409748-51409811)
[»] chr6 (6 HSPs)
chr6 (173-238)||(2034270-2034335)
chr6 (173-234)||(32165305-32165366)
chr6 (173-204)||(8011135-8011166)
chr6 (195-238)||(10184370-10184413)
chr6 (174-235)||(10755324-10755385)
chr6 (162-206)||(17914901-17914945)
[»] chr5 (11 HSPs)
chr5 (173-235)||(40696981-40697043)
chr5 (173-228)||(1942990-1943045)
chr5 (195-238)||(15413994-15414037)
chr5 (175-238)||(38461323-38461386)
chr5 (173-235)||(42706776-42706838)
chr5 (174-238)||(28357333-28357397)
chr5 (195-234)||(5203478-5203517)
chr5 (195-238)||(25332279-25332322)
chr5 (195-238)||(33757090-33757133)
chr5 (174-235)||(41534604-41534665)
chr5 (198-238)||(26003002-26003042)
[»] chr7 (12 HSPs)
chr7 (174-235)||(47511024-47511085)
chr7 (174-238)||(29378626-29378690)
chr7 (195-238)||(24371447-24371490)
chr7 (174-235)||(43818923-43818982)
chr7 (197-234)||(18260890-18260927)
chr7 (195-244)||(21027548-21027597)
chr7 (174-235)||(30094775-30094836)
chr7 (197-235)||(35809094-35809132)
chr7 (196-238)||(42083458-42083500)
chr7 (174-232)||(46743931-46743989)
chr7 (174-206)||(22032729-22032761)
chr7 (173-201)||(35809056-35809084)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 43796751 - 43796975
Alignment:
Q  14 gaacttttgtgttggtgaatcatcatcaaatgggaatggcaagaatgagcttggtggtgatagaaacagcagtgataagcaactaaagaaaggaaaaggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796751 gaacttttgtgttggtgaatcatcatcaaatgggaatggcaagaatgagcttggtggtgatagaaacagcagtgataagcaactaaagaaaggaaaaggt 43796850  T
Q  114 ttatttgatttgaatgagtcgtatgttatagaggactaagcaagttgtagttaaggggtcgtttggattggcttattttagagcttatgtaaataaataa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796851 ttatttgatttgaatgagtcgtatgttatagaggactaagcaagttgtagttaaggggtcgtttggattggcttattttagagcttatgtaaataaataa 43796950  T
Q  214 gtattaatgtattatttataagttt 238  Q
    |||||||||||||||||||||||||    
T  43796951 gtattaatgtattatttataagttt 43796975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 43797039 - 43797152
Alignment:
Q  238 tagtaagctcaaaattgactcaatccaaacaggccgaggtggtaatgcaatatattatttgcatgctttctgctttttattacattataatctatattaa 337  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797039 tagtaagctcaaaatagactcaatccaaacaggcccaggtggtaatgcaatatattatttgcatgctttctgctttttattacattataatctatattaa 43797138  T
Q  338 tttttacatttgtt 351  Q
    ||||||||||||||    
T  43797139 tttttacatttgtt 43797152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 12238589 - 12238527
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  12238589 cgttgggattggcttattttagagcttatgcaaataaataagcattaatgtattatttataag 12238527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 17317159 - 17317200
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataag 214  Q
    ||||||||||| |||||||| |||||||||||||||||||||    
T  17317159 cgtttggattgacttatttttgagcttatgtaaataaataag 17317200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 32522129 - 32522090
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  32522129 agcttatgtaaataaataagtttttatgtattatttataa 32522090  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 40301354 - 40301397
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  40301354 agcttatgcaaataaataagtttttatgtattatttataagttt 40301397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 42839424 - 42839361
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||| |||| ||||| | ||||||||||| |||||||||| || |||||||||| ||||||||    
T  42839424 tttgggttggtttattattgagcttatgtagataaataagtttttatgtattattcataagttt 42839361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 32366154 - 32366195
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  32366154 cttatgcaaataaataagtttttatgtattatttataagttt 32366195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 2401748 - 2401708
Alignment:
Q  166 aaggggtcgtttggattggcttattttagagcttatgtaaa 206  Q
    ||||| ||||||||||| |||||||||||||||||| ||||    
T  2401748 aagggctcgtttggattagcttattttagagcttatataaa 2401708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 12224019 - 12223971
Alignment:
Q  167 aggggtcgtttggattggcttattttagagcttatgtaaataaataagt 215  Q
    |||| ||||||||||||||||||||| ||||||||| ||| || |||||    
T  12224019 agggttcgtttggattggcttatttttgagcttatgcaaagaattaagt 12223971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 227688 - 227751
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||||||||||||||||||||  |||||||||| ||||||||| |||||||||||||    
T  227688 tttggattggcttattttagagcttatgcgaataaataagcattaatgtagtatttataagttt 227751  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 9781196 - 9781255
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttata 233  Q
    |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  9781196 gtttggattgacttattttagagcttatgcaaataaataagcattaatgtattatttata 9781255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 28280690 - 28280754
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||| ||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||    
T  28280690 gtttggattagcttattttagagcttatgcaaataaatatgcatttatgtattatttataagttt 28280754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 1184762 - 1184828
Alignment:
Q  172 tcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||| |||||||||||||| |||||||| ||||||||||| |||||||||| ||||| ||||||    
T  1184762 tcgtttgaattggcttattttaaagcttatgcaaataaataagcattaatgtatcatttaaaagttt 1184828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 2669630 - 2669693
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||| |||||||| |||||||| |||||||||||   |||||||||||||||||||||    
T  2669630 tttggattggtttattttatagcttatgcaaataaataagctctaatgtattatttataagttt 2669693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 34286668 - 34286607
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||| |||||||| |||||||||||||||||||||  || |||||||||| |||||    
T  34286668 gtttggattgacttatttttgagcttatgtaaataaataagcttttatgtattattcataag 34286607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 31079271 - 31079207
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||| |||||||||||||||||||  |||||||| | ||| ||||||||||| |||||||    
T  31079271 gtttggattagcttattttagagcttatggtaataaatatgcatttatgtattatttttaagttt 31079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 28879038 - 28879100
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||| ||||||||||||| ||||||||| |||||||||||  || |||||||||| |||||    
T  28879038 cgtttgaattggcttatttttgagcttatgcaaataaataagcttttatgtattattcataag 28879100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 35168361 - 35168399
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaat 211  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  35168361 cgtttggattggcttatttttgagcttatgtaaataaat 35168399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 2563363 - 2563403
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  2563363 ttatgcaaataaataaatattaatgtattatttataagttt 2563403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 14942391 - 14942423
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaa 206  Q
    |||||||||||||||||||||||||||||||||    
T  14942391 gtttggattggcttattttagagcttatgtaaa 14942423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 35453392 - 35453456
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttta 239  Q
    |||| |||||||||||||  |||||||| |||||||||||  || |||||||||| |||||||||    
T  35453392 tttgaattggcttattttttagcttatgcaaataaataagcttttatgtattattcataagttta 35453456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 402188 - 402129
Alignment:
Q  179 gattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||| ||||||||  |||| | |||||||||||||| || |||||||||||||||||||    
T  402188 gattgtcttattttttagctaacgtaaataaataagtttttatgtattatttataagttt 402129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 30973991 - 30974030
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  30973991 agcttatgtaaataaagaagcattaatgtattatttataa 30974030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 42102109 - 42102152
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  42102109 agcttatgcaaataaataagtttttatgtattatttataagttt 42102152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 42363400 - 42363357
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  42363400 agcttatgcaaataaataagtttttatgtattatttataagttt 42363357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 2563323 - 2563357
Alignment:
Q  172 tcgtttggattggcttattttagagcttatgtaaa 206  Q
    ||||||||||||||||||||||||| |||||||||    
T  2563323 tcgtttggattggcttattttagaggttatgtaaa 2563357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 18396916 - 18396953
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaa 210  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18396916 cgtttggattggcttatttttgagcttatgcaaataaa 18396953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 30973955 - 30973984
Alignment:
Q  173 cgtttggattggcttattttagagcttatg 202  Q
    ||||||||||||||||||||||||||||||    
T  30973955 cgtttggattggcttattttagagcttatg 30973984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 218333 - 218293
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  218333 ttatgtaaataaataaatttttatgtattatttataagttt 218293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 694893 - 694853
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  694893 ttatgtaaataaataaatttttatgtattatttataagttt 694853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 699102 - 699062
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  699102 ttatgtaaataaataaatttttatgtattatttataagttt 699062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 731956 - 731916
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  731956 ttatgtaaataaataaatttttatgtattatttataagttt 731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 855852 - 855812
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  855852 ttatgtaaataaataaatttttatgtattatttataagttt 855812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 11988202 - 11988242
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||| |||||||||||| || |||||||||||||||||||    
T  11988202 ttatgcaaataaataagtttttatgtattatttataagttt 11988242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 19925469 - 19925433
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  19925469 ttatgcaaataaataagcattaatgtattatttataa 19925433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 37410993 - 37410957
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||||||||||||||| || |||||||||||||||    
T  37410993 ttatgtaaataaataagtttttatgtattatttataa 37410957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 43577226 - 43577262
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  43577226 ttatgcaaataaataaatattaatgtattatttataa 43577262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 38524069 - 38524129
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  38524069 gtttggattaacttattttagagtttatgcaaataaataagtattaatgtattatttataa 38524129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 37601131 - 37601071
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||| |||||||||||||||||| ||||||||||   |||||||||||||||||||    
T  37601131 tttggattgacttattttagagcttatgcaaataaataaacgttaatgtattatttataag 37601071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 43376678 - 43376737
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||| |||||||||| |||||||| ||||||||  || |||||||||||||||||||    
T  43376678 gtttggattagcttattttacagcttatgcaaataaat--gtcttaatgtattatttataag 43376737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 45331401 - 45331361
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataa 213  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  45331401 cgtttggattggcttattttttagcttatgtaaataaataa 45331361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 3645305 - 3645344
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  3645305 agcttatgtaaataaataagtttttatgtattatttataa 3645344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 20894505 - 20894544
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20894505 agcttatgtaaataaataagtttttatgtattatttataa 20894544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 29614196 - 29614235
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  29614196 agcttatgtaaataaataagtttttatgtattatttataa 29614235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 2086811 - 2086782
Alignment:
Q  173 cgtttggattggcttattttagagcttatg 202  Q
    ||||||||||||||||||||||||||||||    
T  2086811 cgtttggattggcttattttagagcttatg 2086782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 4257383 - 4257342
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  4257383 cttatgcaaataaataagtttttatgtattatttataagttt 4257342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 4974277 - 4974306
Alignment:
Q  173 cgtttggattggcttattttagagcttatg 202  Q
    ||||||||||||||||||||||||||||||    
T  4974277 cgtttggattggcttattttagagcttatg 4974306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 19307817 - 19307874
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattattt 230  Q
    ||||||||||  | |||||||||| ||| ||||||||||||| ||||| |||||||||    
T  19307817 cgtttggattaacatattttagagtttacgtaaataaataagcattaaagtattattt 19307874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 45049480 - 45049415
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||| ||||||||| || ||||  ||||||| ||| |||||| |||| |||||||||||    
T  45049480 cgtttggattgacttattttaaagtttatacaaataaacaagcattaatatattgtttataagttt 45049415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 29270512 - 29270472
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataag 214  Q
    |||||||||||||||||||  |||||||| |||||||||||    
T  29270512 gtttggattggcttattttttagcttatgcaaataaataag 29270472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 2691 - 2624
Alignment:
Q  167 aggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||| |||||| |||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||    
T  2691 aggggccgtttgtattgacttattttagagtttatgcaaataaagaagtattaatgtattatttataa 2624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 22397415 - 22397348
Alignment:
Q  169 gggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagt 236  Q
    |||||||||| ||||  ||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  22397415 gggtcgtttgaattgatttattttagagcttatacaaataaataaatattaatgtattatttataagt 22397348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 43983481 - 43983426
Alignment:
Q  180 attggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  43983481 attggcttattttagagcttatacaaataaataagcattaatgtattatttataag 43983426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 7148752 - 7148814
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||||||||||||| ||||||||| |||||||||||  || |||||||||| |||||    
T  7148752 cgtttggattggcttatttttgagcttatgcaaataaataagcttttatgtattattcataag 7148814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 2141621 - 2141682
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||| ||| ||||||||||||||||||| |||||||||||  || |||| ||||||||||    
T  2141621 cgtttgaattagcttattttagagcttatgcaaataaataagcttttatgtgttatttataa 2141682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 26206459 - 26206398
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||  |||||||||||| ||||| ||||||||| || || ||||||||||||||||    
T  26206459 gtttggattatcttattttagagtttatgcaaataaatatgtctttatgtattatttataag 26206398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 48591538 - 48591474
Alignment:
Q  165 taaggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatt 229  Q
    |||||| ||||| ||||||||||||||  ||||||||| |||||||||||| || || |||||||    
T  48591538 taagggttcgttaggattggcttatttctgagcttatgcaaataaataagtttttatatattatt 48591474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 54412153 - 54412093
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttata 233  Q
    ||||||||||||||||||||  | |||||| |||||||||| | || ||||||||||||||    
T  54412153 cgtttggattggcttattttttaacttatgcaaataaataaatttttatgtattatttata 54412093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 2702799 - 2702756
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| | |||||||||||||| ||||||||||||||||||    
T  2702799 agcttatgcacataaataagtattagtgtattatttataagttt 2702756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 15184549 - 15184588
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  15184549 agcttatgtaaataaataagtttttatgtattatttataa 15184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 55852998 - 55853041
Alignment:
Q  180 attggcttattttagagcttatgtaaataaataagtattaatgt 223  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||    
T  55852998 attggtttattttagaatttatgtaaataaataagtattaatgt 55853041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 52700626 - 52700588
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  52700626 cttatgtaaataaataagtctttatgtattatttataag 52700588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 9201655 - 9201696
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  9201655 cttatgcaaataaataagtttttatgtattatttataagttt 9201696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 9319211 - 9319170
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataag 214  Q
    ||||||| ||||||||||||  ||||||||||||||||||||    
T  9319211 cgtttggtttggcttattttttagcttatgtaaataaataag 9319170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 52274225 - 52274164
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||| ||||||||||||| ||||||||| ||||||||||   || |||||||||| |||||    
T  52274225 gtttgaattggcttatttttgagcttatgcaaataaataaacttttatgtattattgataag 52274164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 825663 - 825703
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataag 214  Q
    |||||||||||||| |||| ||||||||| |||||||||||    
T  825663 gtttggattggcttctttttgagcttatgcaaataaataag 825703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 2702834 - 2702806
Alignment:
Q  174 gtttggattggcttattttagagcttatg 202  Q
    |||||||||||||||||||||||||||||    
T  2702834 gtttggattggcttattttagagcttatg 2702806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 28663408 - 28663464
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatt 229  Q
    ||||||||||| |||||||| ||||||||| |||||||| ||  || ||||||||||    
T  28663408 cgtttggattgacttatttttgagcttatgcaaataaatgagcttttatgtattatt 28663464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 35010220 - 35010256
Alignment:
Q  202 gtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||| || |||||||||||||||||||    
T  35010220 gtaaataaataagtttttatgtattatttataagttt 35010256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 43136722 - 43136662
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||||||| |||||||| |||||||||  ||||||||||| || |||| ||||| ||||    
T  43136722 gtttggattgacttatttttgagcttatgcgaataaataagtctttatgtgttattcataa 43136662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 8410120 - 8410194
Alignment:
Q  164 ttaaggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||| ||||||| ||| |||||||||||||| |||| |||||||||||| || |||||||||| ||||||||    
T  8410120 ttaagggctcgtttgaattagcttattttagagcctatgcaaataaataagtttttatgtattattcataagttt 8410194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 6337856 - 6337800
Alignment:
Q  179 gattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||| ||||||||||||||||||||||||||||||  || |||||||||| |||||    
T  6337856 gattgacttattttagagcttatgtaaataaataagcttttatgtattattcataag 6337800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 48819281 - 48819341
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||||||||||| ||||||||| |||||||| ||  ||||||||||||| |||||    
T  48819281 tttggattggcttatttttgagcttatgcaaataaatgagctttaatgtattattcataag 48819341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 15235244 - 15235201
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  15235244 agcttatgtaaataaataagtttttatgtattatttataagttt 15235201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 15791386 - 15791429
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||||||||||||| || |||||||||||||||||||    
T  15791386 agcttatgtaaataaataagtttttatgtattatttataagttt 15791429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 28870199 - 28870261
Alignment:
Q  168 ggggtcgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattattt 230  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||||  ||| |||||||||||    
T  28870199 gggggcgtttagattggcttatttttgagcttatgcaaataaataaacatttatgtattattt 28870261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 29333428 - 29333462
Alignment:
Q  204 aaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||||||||||||||||||||||    
T  29333428 aaataaataagtattaatgtattatttataagttt 29333462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 37148177 - 37148136
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagt 236  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  37148177 agcttatgcaaataaataagcattaatgtattatttataagt 37148136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 37157002 - 37156961
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagt 236  Q
    |||||||| ||||||||||| |||||||||||||||||||||    
T  37157002 agcttatgcaaataaataagcattaatgtattatttataagt 37156961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 22088495 - 22088452
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||||||||||||| || |||||||||||| ||||||    
T  22088495 agcttatgtaaataaataagtttttatgtattatttacaagttt 22088452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 32497355 - 32497312
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  32497355 agcttatgcaaataaataagtttttatgtattatttataagttt 32497312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 51162271 - 51162314
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||    
T  51162271 agcttatgcaaataaataagcattaatgtattatttacaagttt 51162314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 37431145 - 37431187
Alignment:
Q  172 tcgtttggattggcttattttagagcttatgtaaataaataag 214  Q
    ||||||||||||||||||||| |||||| || |||||||||||    
T  37431145 tcgtttggattggcttatttttgagcttgtgcaaataaataag 37431187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 41003391 - 41003432
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  41003391 cttatgcaaataaataagtttttatgtattatttataagttt 41003432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 32810875 - 32810915
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  32810875 ttatgtaaataaataagccttcatgtattatttataagttt 32810915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 38781059 - 38781095
Alignment:
Q  179 gattggcttattttagagcttatgtaaataaataagt 215  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  38781059 gattggcttatttttgagcttatgcaaataaataagt 38781095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 45267446 - 45267486
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataag 214  Q
    |||||||||| |||||||| ||||||||| |||||||||||    
T  45267446 gtttggattgacttatttttgagcttatgcaaataaataag 45267486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 51409811 - 51409748
Alignment:
Q  175 tttggatt-ggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||| ||||||||| |||||||||||| |  |||||||||| ||||||||    
T  51409811 tttggattaggcttatttt-gagcttatgcaaataaataagtttgtatgtattattcataagttt 51409748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 2034335 - 2034270
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||||||| |||| ||||||||| |||||||||||  || |||||||||||||||||||    
T  2034335 cgtttggattggcttgtttttgagcttatgcaaataaataagcttttatgtattatttataagttt 2034270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 32165366 - 32165305
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||    
T  32165366 cgtttggattagcttattttagagtttatgaaaataaataagtttttatgtattatttataa 32165305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 204
Target Start/End: Complemental strand, 8011166 - 8011135
Alignment:
Q  173 cgtttggattggcttattttagagcttatgta 204  Q
    ||||||||||||||||||||||||||||||||    
T  8011166 cgtttggattggcttattttagagcttatgta 8011135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 10184413 - 10184370
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||||||||||||||| || || ||||||||||||||||    
T  10184413 agcttatgtaaataaataagtttttatctattatttataagttt 10184370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 10755385 - 10755324
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||||||||||||  |||||||| |||||||||||  || | |||||||| |||||    
T  10755385 gtttggattggcttattttttagcttatgcaaataaataagcttttacgtattattcataag 10755324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 17914901 - 17914945
Alignment:
Q  162 agttaaggggtcgtttggattggcttattttagagcttatgtaaa 206  Q
    ||||||||| |||||||||||  ||||||||||||||||| ||||    
T  17914901 agttaagggctcgtttggattaacttattttagagcttatataaa 17914945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 40696981 - 40697043
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||| |||| |||||||| ||||||||| |||||||||||| || ||||||||||||||||    
T  40696981 cgtttgaattgacttatttttgagcttatgcaaataaataagtttttatgtattatttataag 40697043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 1942990 - 1943045
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattat 228  Q
    |||||||||||||||||||| ||||||||| || ||||||||| || |||||||||    
T  1942990 cgtttggattggcttatttttgagcttatgcaagtaaataagtttttatgtattat 1943045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 15413994 - 15414037
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15413994 agcttatgcaaataaataagtattaatgtattattgataagttt 15414037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 38461386 - 38461323
Alignment:
Q  175 tttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||  |||||||||||||||||  |||||||||||  || |||||||||||||||||||    
T  38461386 tttggattaacttattttagagcttataaaaataaataagcctttatgtattatttataagttt 38461323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 42706776 - 42706838
Alignment:
Q  173 cgtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||||||||||||| ||||||||| |||||||||||  || | |||||||| |||||    
T  42706776 cgtttggattggcttatttttgagcttatgcaaataaataagcttttaagtattattcataag 42706838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 28357333 - 28357397
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||||||| |||||||||| |||||||| ||||||||| |  |  |||||||||||||||||||    
T  28357333 gtttggattagcttattttaaagcttatgcaaataaatatgcctatatgtattatttataagttt 28357397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 5203517 - 5203478
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataa 234  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  5203517 agcttatgcaaataaataagtatttatgtattatttataa 5203478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 25332322 - 25332279
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||    
T  25332322 agcttatgcaaataaataagcattaatatattatttataagttt 25332279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 33757090 - 33757133
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||| || |||||||||||||||||||    
T  33757090 agcttatgcaaataaataagtttttatgtattatttataagttt 33757133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 41534604 - 41534665
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||||||||||||||||  || ||||| |||||||||||  || |||||||||| |||||    
T  41534604 gtttggattggcttatttttcagattatgcaaataaataagcttttatgtattattcataag 41534665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 26003002 - 26003042
Alignment:
Q  198 ttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    ||||| |||||||||||| || |||||||||||||||||||    
T  26003002 ttatgcaaataaataagtttttatgtattatttataagttt 26003042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 47511024 - 47511085
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||||||||||||| ||||||||| |||||||||||  || |||||||||| |||||    
T  47511024 gtttggattggcttatttttgagcttatgcaaataaataagcttttatgtattattcataag 47511085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 29378626 - 29378690
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||| || ||||||||| |||||||||||  || ||||||||||||| |||||    
T  29378626 gtttggattggcttatctttgagcttatgcaaataaataagcttttatgtattatttatgagttt 29378690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 24371490 - 24371447
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  24371490 agcttatgcaaataaataagttttaatgtattatttataagttt 24371447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 43818982 - 43818923
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||| ||||||||||||||||||| ||||||||  || || ||||||||||||||||    
T  43818982 gtttggattagcttattttagagcttatgcaaataaat--gtctttatgtattatttataag 43818923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 18260927 - 18260890
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataa 234  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18260927 cttatgtaaataaataagtattaatgtattagttataa 18260890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 21027597 - 21027548
Alignment:
Q  195 agcttatgtaaataaataagtattaatgtattatttataagtttagtaag 244  Q
    |||||||||||| |||||||| || |||||||||||||||||||| ||||    
T  21027597 agcttatgtaaacaaataagtttttatgtattatttataagtttattaag 21027548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 30094836 - 30094775
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttataag 235  Q
    ||||||||| ||||||||||||||||||  ||||||||  || ||||| |||||||||||||    
T  30094836 gtttggattagcttattttagagcttatacaaataaatgtgtcttaatatattatttataag 30094775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 35809094 - 35809132
Alignment:
Q  197 cttatgtaaataaataagtattaatgtattatttataag 235  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  35809094 cttatgcaaataaataagcattaatgtattatttataag 35809132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 42083500 - 42083458
Alignment:
Q  196 gcttatgtaaataaataagtattaatgtattatttataagttt 238  Q
    |||||||||||||||||||| || |||||||||| ||||||||    
T  42083500 gcttatgtaaataaataagtttttatgtattattcataagttt 42083458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 46743931 - 46743989
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaataaataagtattaatgtattatttat 232  Q
    ||||||||||||||| ||| ||||| ||| |||||||||||  || |||||||||||||    
T  46743931 gtttggattggcttacttttgagctcatgcaaataaataagattttatgtattatttat 46743989  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 22032729 - 22032761
Alignment:
Q  174 gtttggattggcttattttagagcttatgtaaa 206  Q
    ||||||||| |||||||||||||||||||||||    
T  22032729 gtttggattagcttattttagagcttatgtaaa 22032761  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 35809056 - 35809084
Alignment:
Q  173 cgtttggattggcttattttagagcttat 201  Q
    |||||||||||||||||||||||||||||    
T  35809056 cgtttggattggcttattttagagcttat 35809084  T

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