View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_low_1 (Length: 1013)
Name: NF5208_low_1
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 642 - 1003
Target Start/End: Complemental strand, 49979042 - 49978681
Alignment:
| Q |
642 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
741 |
Q |
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| T |
49979042 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
49978943 |
T |
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| Q |
742 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
841 |
Q |
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| T |
49978942 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
49978843 |
T |
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| Q |
842 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
941 |
Q |
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| T |
49978842 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
49978743 |
T |
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| Q |
942 |
gatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatg |
1003 |
Q |
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| T |
49978742 |
gatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatg |
49978681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 49979678 - 49979374
Alignment:
| Q |
19 |
gatctttggctaggaagaaagggggtctgtgtttgtattatgtatggttttcgaactgataaggtttctagatatgcgttaagaagaaatttgattgata |
118 |
Q |
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| T |
49979678 |
gatctttggctaggaagaaagggggtctgtgtttgtattatgtatggttttcgaactgataaggtttctagatatgcgttaagaagaaatttgattgata |
49979579 |
T |
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| Q |
119 |
gtagaggcatgattgattgtttgaatattctatgtatgag--tatgccggaaacactcagctggagtattcgacttttgttgtgatattaccttaattgt |
216 |
Q |
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| T |
49979578 |
gtagaggcatgattgattgtttgaatattctatgtatgagagtataccggaaacactcagctggagtattcgacttttgttgtgatattaccttaattgt |
49979479 |
T |
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| Q |
217 |
gcaagcatagtgtgacactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagaggtagatttttggatttt |
316 |
Q |
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| T |
49979478 |
gcaagcatagtgtgacactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagaggtagatttttggatttt |
49979379 |
T |
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| Q |
317 |
tagtt |
321 |
Q |
| |
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||||| |
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| T |
49979378 |
tagtt |
49979374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 405 - 628
Target Start/End: Complemental strand, 49979290 - 49979068
Alignment:
| Q |
405 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcccacagctagaatccaaagtagctg |
504 |
Q |
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| T |
49979290 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcc-acagctagaatccaaagtagctg |
49979192 |
T |
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| Q |
505 |
aggttgtgaatgatctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagca |
604 |
Q |
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| T |
49979191 |
aggttgtgaatgagctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagca |
49979092 |
T |
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| Q |
605 |
ccttaattaattatgaatcatcta |
628 |
Q |
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| T |
49979091 |
ccttaattaattatgaatcatcta |
49979068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 752 - 808
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
752 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
808 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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