View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5208_low_11 (Length: 332)

Name: NF5208_low_11
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5208_low_11
NF5208_low_11
[»] chr4 (3 HSPs)
chr4 (38-119)||(39379636-39379717)
chr4 (255-326)||(39379423-39379494)
chr4 (164-218)||(39379531-39379585)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 39379717 - 39379636
Alignment:
Q  38 catatttgcaacaagaggtataagttttgttgagctgtaaatgtccttcttctacacccttttaatatcaaccctcatatag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379717 catatttgcaacaagaggtataagttttgttgagctgtaaatgtccttcttctacacccttttaatatcaaccctcatatag 39379636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 39379494 - 39379423
Alignment:
Q  255 aaacaatgttcaaaaaccactccctagtcaaatttctaaaaccatgaaaacaacactttctcttcttctcac 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379494 aaacaatgttcaaaaaccactccctagtcaaatttctaaaaccatgaaaacaacactttctcttcttctcac 39379423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 39379585 - 39379531
Alignment:
Q  164 acaatataattccttccacatggacctctgtcctatcgcattaaatccccgttac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39379585 acaatataattccttccacatggacctctgtcctatcgcattaaatccccgttac 39379531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University