View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_low_13 (Length: 320)
Name: NF5208_low_13
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_low_13 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 38256068 - 38256371
Alignment:
| Q |
17 |
agagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtcctttatctagcatactagaatttgacctaaatgaatttgacaacaccat |
116 |
Q |
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| T |
38256068 |
agagatatggtaccttagacatcatgttcagcaatgctggtaacgctggtcctttatctagcatactagaatttaacctaaatgaatttgacaacaccat |
38256167 |
T |
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| Q |
117 |
ggctgtgaacgttcatggtgcagctgcaactatcaagcatgctgcacgtgtaatggtggaaagaaaaatacgtggatcaataatttgcactgccagtgta |
216 |
Q |
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| T |
38256168 |
ggctgtgaacattcgtggtgcagctgcaactatcaagcatgcttcacgtgtaatggtggaaagaaaaatacgaggatcaataatttgcacagccagtgta |
38256267 |
T |
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| Q |
217 |
gctggttttgttggtggatgtgcaggacatgattatacagcatcaaaacatggtcttataggccttgttaggtcagcatgcggtgagcttggagcttatg |
316 |
Q |
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| T |
38256268 |
gctggttttgttggtagatgtgcaggacatgattatacagcatcaaaacatggtcttataggccttgttaggtcagcatgcggtgagcttggagcttatg |
38256367 |
T |
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| Q |
317 |
gaat |
320 |
Q |
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|||| |
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| T |
38256368 |
gaat |
38256371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 95 - 320
Target Start/End: Original strand, 45152327 - 45152552
Alignment:
| Q |
95 |
taaatgaatttgacaacaccatggctgtgaacgttcatggtgcagctgcaactatcaagcatgctgcacgtgtaatggtggaaagaaaaatacgtggatc |
194 |
Q |
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| T |
45152327 |
taaatgaatttgacaacaccatggccattaatgttcgtggatcagctacaactatcaagcacgctgcgcgtgttatggtggaaagaaaaattcgtggatc |
45152426 |
T |
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| Q |
195 |
aataatttgcactgccagtgtagctggttttgttggtggatgtgcaggacatgattatacagcatcaaaacatggtcttataggccttgttaggtcagca |
294 |
Q |
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| T |
45152427 |
cataatttgcacggctagtgtggctggctttgttgctggatgtgcaggacatgattatacaacatccaaacatggtcttataggccttgttcgctcaacg |
45152526 |
T |
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| Q |
295 |
tgcggtgagcttggagcttatggaat |
320 |
Q |
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| T |
45152527 |
tgcagtgagcttggagcttatggaat |
45152552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 45141663 - 45141807
Alignment:
| Q |
76 |
agcatactagaatttgacctaaatgaatttgacaacaccatggctgtgaacgttcatggtgcagctgcaactatcaagcatgctgcacgtgtaatggtgg |
175 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| | || |||| ||| || ||| |||||||||| ||||||||| | ||||||| |
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| T |
45141663 |
agcatactagaatttgatctgaatgaatttgacaacaccatggccattaatgttcgtggatcactcgcagctatcaagcacgctgcacgtttcatggtgg |
45141762 |
T |
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| Q |
176 |
aaagaaaaatacgtggatcaataatttgcactgccagtgtagctg |
220 |
Q |
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| T |
45141763 |
agagaaaaatccgtggatccataatttgtactgccagtgtagctg |
45141807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 45152248 - 45152283
Alignment:
| Q |
21 |
atatggtaccttagacatcatgttcagcaatgctgg |
56 |
Q |
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| T |
45152248 |
atatggaaccttagacatcatgttcagcaatgctgg |
45152283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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