View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_low_14 (Length: 317)
Name: NF5208_low_14
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 47978402 - 47978695
Alignment:
| Q |
8 |
ccaagaatatatcaaattgccctctaaaattgtgtaacattggttaaaatactcccttcgtcaagtacnnnnnnnnng-gggggatgattcgtcaagcag |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47978402 |
ccaataatatatcaaattgccctctaaaattgtgtaacattggttaaaatactcccttcgtcaagtactttttttttttgggggatgattcgtcaagcag |
47978501 |
T |
|
| Q |
107 |
ttagaggtgatgtatgtatcacacaccacaaattctccaagttgacgtcaattcacataaaaccctgaactcaagtttttaaaccggttatttnnnnnnn |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47978502 |
ttagaggtgatgtatgtatcacacaccacaaattctccaagttgacgtcaattcacataaaaccctgaactcaagtttttaaaccggttatttaaaaaaa |
47978601 |
T |
|
| Q |
207 |
nnngtttttaaaccggttaaaatcttgaatttttatgtgtagactcgtcatcattgctaattgatttcagtgttccaatgttagaagttcaata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47978602 |
aaagtttttaaaccggttaaaatcttgaatttttatgtgtagactcgtcatcattgctaattgatttcagtgttccaatgttagaagttcaata |
47978695 |
T |
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