View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_low_15 (Length: 273)
Name: NF5208_low_15
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 31096589 - 31096841
Alignment:
| Q |
14 |
caacaatgatataaacaagagtaaaattgctcaaaagcatggtaggtctttacagactagacatttaacactagaaaatggttacaccatcaagatggtt |
113 |
Q |
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| T |
31096589 |
caacaatgatataaacaagagtaaaattgctcaaaagcatggtaggtctttactgactagacatttaacactagaaaatgtttacaccatcaagatggtt |
31096688 |
T |
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| Q |
114 |
tcattgagattttatttgcatctttgattttgtgtgcaatatagattgggatagtgagaatgatgatgaagttaacctagtttagtaggattgctttcta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31096689 |
tcattgagattttatttgcatctttgattttgtgtgcaatatagattgggatagtgagaatgatgatgaagttaacctagtttagtaggattgctttcta |
31096788 |
T |
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| Q |
214 |
atcaaaatcctaaagtatagaaaatttgttccttaaaatataagtgatgatgt |
266 |
Q |
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| T |
31096789 |
atcaaaatcctaaagtatagaaaatttgttccttaaaatataagtgatgatgt |
31096841 |
T |
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