View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_low_18 (Length: 252)
Name: NF5208_low_18
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 36170671 - 36170786
Alignment:
| Q |
16 |
aagcaaaggttaacaaaaggagggaatcagttcatgtgagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaa |
115 |
Q |
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| T |
36170671 |
aagcaaaggttaacaaaaggagggaatcagttcatgtgagcagagagctgcagaggaggaaaccaaagcagagttccaaggtaagagtacattctccaaa |
36170770 |
T |
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| Q |
116 |
gatggttactaaggtt |
131 |
Q |
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| T |
36170771 |
gatggctactaaggtt |
36170786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 36170857 - 36170886
Alignment:
| Q |
202 |
ttgtggaggaaacagacgaagggttagata |
231 |
Q |
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| T |
36170857 |
ttgtggaggaaacagacgaagggttagata |
36170886 |
T |
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