View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5208_low_3 (Length: 472)

Name: NF5208_low_3
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5208_low_3
NF5208_low_3
[»] chr6 (6 HSPs)
chr6 (24-451)||(3884574-3885009)
chr6 (308-423)||(14771710-14771825)
chr6 (30-91)||(17851153-17851217)
chr6 (270-351)||(13191576-13191657)
chr6 (393-441)||(2681189-2681237)
chr6 (393-425)||(2720552-2720584)
[»] chr8 (8 HSPs)
chr8 (270-351)||(25147538-25147619)
chr8 (321-425)||(25148020-25148124)
chr8 (392-441)||(10729659-10729708)
chr8 (392-441)||(34308452-34308501)
chr8 (392-441)||(34308908-34308957)
chr8 (393-441)||(10844588-10844636)
chr8 (393-425)||(31283640-31283672)
chr8 (315-351)||(32292444-32292480)
[»] chr5 (2 HSPs)
chr5 (279-425)||(1821917-1822063)
chr5 (30-141)||(22556772-22556886)
[»] chr3 (8 HSPs)
chr3 (65-147)||(25802803-25802885)
chr3 (30-141)||(25238924-25239038)
chr3 (396-425)||(15381258-15381287)
chr3 (396-425)||(15392183-15392212)
chr3 (396-425)||(15396493-15396522)
chr3 (396-425)||(15410629-15410658)
chr3 (396-425)||(15417045-15417074)
chr3 (393-425)||(16811050-16811082)
[»] scaffold0022 (1 HSPs)
scaffold0022 (268-351)||(69878-69961)
[»] chr4 (9 HSPs)
chr4 (30-147)||(23943027-23943147)
chr4 (392-425)||(7678605-7678638)
chr4 (270-351)||(50399050-50399131)
chr4 (308-349)||(53391927-53391968)
chr4 (317-425)||(1645732-1645840)
chr4 (193-249)||(4185648-4185704)
chr4 (393-425)||(27029402-27029434)
chr4 (393-441)||(44471292-44471340)
chr4 (393-425)||(53996098-53996130)
[»] scaffold0071 (1 HSPs)
scaffold0071 (396-425)||(45164-45193)
[»] chr7 (2 HSPs)
chr7 (30-63)||(6747484-6747517)
chr7 (393-441)||(13122478-13122526)
[»] chr2 (1 HSPs)
chr2 (393-441)||(29804807-29804855)
[»] chr1 (4 HSPs)
chr1 (393-425)||(20060329-20060361)
chr1 (393-441)||(52250331-52250379)
chr1 (393-441)||(52250668-52250716)
chr1 (393-441)||(52251005-52251053)


Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 451
Target Start/End: Complemental strand, 3885009 - 3884574
Alignment:
Q  24 cgatgtaaagacttgtgttggtttgtagggtcaatcggcacttaaattcgtatgagatgttacaagtgctcctagagaagacatctctcagtatgatgtg 123  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  3885009 cgatgtaaagacttgtgttggtttgtagggtcaatgggcacttaaattcgtatgagatgttacaagtgctcttagagaatacctctctcagtatgatgtg 3884910  T
Q  124 gttcagggacgaaccaagtggaagnnnnnnnnn--------attacgaaacgaaccaagtggaagttggtggtcattagggaagtgatcgtcagtgcaca 215  Q
    ||||| ||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3884909 gttcacggacgaaccaagtggaagtttttttttttttttttattacgaaacgaaccaagtggaagttggtggtcattagggaagtgatcgccagtgcaca 3884810  T
Q  216 agacatgaaaatgagcggctcctagttgcttctaagcatatgaaagactcgaattcacatcaaaatgagagagatcctaagattgtgtggtaatgagatt 315  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3884809 agacatgaaaatgagcggctcctagttgcttctaagcaaatgaaagactcgaattcacatcaaaatgagagagatcctaagattgtgtggtaatgagatt 3884710  T
Q  316 gcatggttgaagaaatgctaataagaattgtttggtcttgataatatcaacaatatgtatatcttttttggtggtatattccataagaactccacattta 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  3884709 gcatggttgaagaaatgctaataagaattgtttggtcttgataatatcaacaatatgtatatctttttttgtggtctatttcataagaactccacattta 3884610  T
Q  416 agtgtgcttggtttgaaacaattttgcgattgatga 451  Q
    ||||||||||||||||||||||||||||||||||||    
T  3884609 agtgtgcttggtttgaaacaattttgcgattgatga 3884574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 423
Target Start/End: Complemental strand, 14771825 - 14771710
Alignment:
Q  308 atgagattgcatggttgaagaaatgctaataagaattgtttggtcttgataatatcaacaatatgtatatcttttttggtggtatattccataagaactc 407  Q
    |||||| ||||||||||||| ||  || ||||||||||||||||  |    |||||||||| ||  ||||  ||||||||  | ||||||||||||||||    
T  14771825 atgagactgcatggttgaaggaagacttataagaattgtttggtactacctatatcaacaagatccatattctttttggtaatctattccataagaactc 14771726  T
Q  408 cacatttaagtgtgct 423  Q
    |||| |||||||||||    
T  14771725 cacagttaagtgtgct 14771710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 17851153 - 17851217
Alignment:
Q  30 aaagacttgtgttggtttgtagggtcaatcggc---acttaaattcgtatgagatgttacaagtg 91  Q
    ||||||| |||||||||||||||||||||||||   ||||||  |||| |||| |||||||||||    
T  17851153 aaagactcgtgttggtttgtagggtcaatcggcaatacttaatgtcgtctgagttgttacaagtg 17851217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 13191657 - 13191576
Alignment:
Q  270 tcacatcaaaatgagagagatcctaagattgtgtggtaatgagattgcatggttgaagaaatgctaataagaattgtttggt 351  Q
    |||||||  |||||||| |||||||||| | ||| |  ||| || ||||||||||||| || ||| ||||||||||||||||    
T  13191657 tcacatcggaatgagagggatcctaagactatgtaggtatgggactgcatggttgaaggaaggcttataagaattgtttggt 13191576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 2681237 - 2681189
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| ||||||  |||| ||||||||||    
T  2681237 attccataagaactccacaattaagcgtgcttaatttggaacaattttg 2681189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 2720584 - 2720552
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||| |||||||||||||    
T  2720584 attccataagaactccacagttaagtgtgcttg 2720552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 351
Target Start/End: Original strand, 25147538 - 25147619
Alignment:
Q  270 tcacatcaaaatgagagagatcctaagattgtgtggtaatgagattgcatggttgaagaaatgctaataagaattgtttggt 351  Q
    |||||||  ||||||||||||||||||| ||||| |  |||||| ||||||||||||| || ||| ||||||||||||||||    
T  25147538 tcacatcggaatgagagagatcctaagactgtgtaggtatgagactgcatggttgaaggaaggcttataagaattgtttggt 25147619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 321 - 425
Target Start/End: Original strand, 25148020 - 25148124
Alignment:
Q  321 gttgaagaaatgctaataagaattgtttggtcttgataatatcaacaatatgtatatcttttttggtggtatattccataagaactccacatttaagtgt 420  Q
    ||||||| || ||| |||||||||||||||||||    |||||||||| ||| ||||  |||| ||| |   ||||||||||||||||||| ||||| ||    
T  25148020 gttgaaggaaggcttataagaattgtttggtcttacctatatcaacaagatgcatattcttttcggtagctcattccataagaactccacagttaagcgt 25148119  T
Q  421 gcttg 425  Q
    |||||    
T  25148120 gcttg 25148124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 10729708 - 10729659
Alignment:
Q  392 tattccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||| |||||||| ||||| |||||||| ||||| ||||||||    
T  10729708 tattccataaggactccacaattaagggtgcttggcttgaagcaattttg 10729659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 34308501 - 34308452
Alignment:
Q  392 tattccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    |||||||||||||||||||| ||||| |||||||| ||| | ||||||||    
T  34308501 tattccataagaactccacacttaagcgtgcttggcttggagcaattttg 34308452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 34308957 - 34308908
Alignment:
Q  392 tattccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    |||||||||||||||||||| ||||| |||||||| ||| | ||||||||    
T  34308957 tattccataagaactccacagttaagcgtgcttggcttggagcaattttg 34308908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 10844636 - 10844588
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  10844636 attccataagaactccacagttaagcgtgcttgacttgaagcaattttg 10844588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 31283672 - 31283640
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||| |||||||||||||    
T  31283672 attccataagaactccacagttaagtgtgcttg 31283640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 32292444 - 32292480
Alignment:
Q  315 tgcatggttgaagaaatgctaataagaattgtttggt 351  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  32292444 tgcatggttgaaggaatgcttataagaattgtttggt 32292480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 279 - 425
Target Start/End: Original strand, 1821917 - 1822063
Alignment:
Q  279 aatgagagagatcctaagattgtgtggtaatgagattgcatggttgaagaaatgctaataagaattgtttggtcttgataatatcaacaatatgtatatc 378  Q
    ||||||||||||| |||| | |||  |  |||||| ||||||||||||| || ||| ||||||||||||||||  |    |||||||||| ||| || |     
T  1821917 aatgagagagatcttaaggtcgtgcaggtatgagactgcatggttgaaggaaggcttataagaattgtttggtactacctatatcaacaagatgcatctt 1822016  T
Q  379 ttttttggtggtatattccataagaactccacatttaagtgtgcttg 425  Q
     |||||||| |   ||||||||||||||||||||||||| |||||||    
T  1822017 ctttttggtagcccattccataagaactccacatttaagcgtgcttg 1822063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 22556772 - 22556886
Alignment:
Q  30 aaagacttgtgttggtttgtagggtcaatcggca---cttaaattcgtatgagatgttacaagtgctcctagagaagacatctctcagtatgatgtggtt 126  Q
    ||||||| ||||||||||||||||||| ||| ||   |||||  |||| || |||||||||| || |   |||| |||| |||| ||||| |||||||||    
T  22556772 aaagactcgtgttggtttgtagggtcagtcgacaatccttaatgtcgtctgggatgttacaaatggtatcagagcagacctctcccagtacgatgtggtt 22556871  T
Q  127 cagggacgaaccaag 141  Q
    |  ||||||||||||    
T  22556872 cgaggacgaaccaag 22556886  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 25802885 - 25802803
Alignment:
Q  65 ttaaattcgtatgagatgttacaagtgctcctagagaagacatctctcagtatgatgtggttcagggacgaaccaagtggaag 147  Q
    |||||||||| || ||||||||||||| |   |||| |||| |||| |||||||||||||||| |||| |||||||| |||||    
T  25802885 ttaaattcgtctgggatgttacaagtggtatcagagcagacctctcccagtatgatgtggttcggggatgaaccaagcggaag 25802803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 25239038 - 25238924
Alignment:
Q  30 aaagacttgtgttggtttgtagggtcaatcggca---cttaaattcgtatgagatgttacaagtgctcctagagaagacatctctcagtatgatgtggtt 126  Q
    ||||||| ||||||||||||||||||| ||| ||   |||||| |||||||||||||||||| || |   |||| |||| | || ||||| | |||||||    
T  25239038 aaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtatgagatgttacaaatggtatcagagcagacctttcccagtacggtgtggtt 25238939  T
Q  127 cagggacgaaccaag 141  Q
    | |||| ||||||||    
T  25238938 cggggatgaaccaag 25238924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 15381258 - 15381287
Alignment:
Q  396 ccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||||||||||||||    
T  15381258 ccataagaactccacatttaagtgtgcttg 15381287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 15392183 - 15392212
Alignment:
Q  396 ccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||||||||||||||    
T  15392183 ccataagaactccacatttaagtgtgcttg 15392212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 15396493 - 15396522
Alignment:
Q  396 ccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||||||||||||||    
T  15396493 ccataagaactccacatttaagtgtgcttg 15396522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 15410629 - 15410658
Alignment:
Q  396 ccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||||||||||||||    
T  15410629 ccataagaactccacatttaagtgtgcttg 15410658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Original strand, 15417045 - 15417074
Alignment:
Q  396 ccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||||||||||||||    
T  15417045 ccataagaactccacatttaagtgtgcttg 15417074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 16811050 - 16811082
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttg 425  Q
    |||||||||||||| ||||||||||||||||||    
T  16811050 attccataagaacttcacatttaagtgtgcttg 16811082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 69961 - 69878
Alignment:
Q  268 attcacatcaaaatgagagagatcctaagattgtgtggtaatgagattgcatggttgaagaaatgctaataagaattgtttggt 351  Q
    |||||||||| |||||||| |||||||||| | ||  |  |||||| ||||| ||||||| |||||| |||| |||||||||||    
T  69961 attcacatcataatgagagggatcctaagactatgcaggtatgagactgcatcgttgaaggaatgcttataataattgtttggt 69878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 23943147 - 23943027
Alignment:
Q  30 aaagacttgtgttggtttgtagggtcaatcggca---cttaaattcgtatgagatgttacaagtgctcctagagaagacatctctcagtatgatgtggtt 126  Q
    ||||||| ||||||||||||||||||| ||| ||   |||||| |||| || |||||||||| || |   |||| | || |||| ||||| | |||||||    
T  23943147 aaagactcgtgttggtttgtagggtcagtcgacaatgcttaaagtcgtctgggatgttacaaatggtatcagagcatacctctcccagtacggtgtggtt 23943048  T
Q  127 cagggacgaaccaagtggaag 147  Q
    | ||||||||||||| |||||    
T  23943047 cggggacgaaccaagcggaag 23943027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 425
Target Start/End: Complemental strand, 7678638 - 7678605
Alignment:
Q  392 tattccataagaactccacatttaagtgtgcttg 425  Q
    |||||||||||||||||||| |||||||||||||    
T  7678638 tattccataagaactccacagttaagtgtgcttg 7678605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 50399131 - 50399050
Alignment:
Q  270 tcacatcaaaatgagagagatcctaagattgtgtggtaatgagattgcatggttgaagaaatgctaataagaattgtttggt 351  Q
    |||||||  |||||||| |||||| |||  |||| |  |||||||| ||||||||||| || ||| ||||||||||||||||    
T  50399131 tcacatcggaatgagagggatcctgagaccgtgtaggtatgagattacatggttgaaggaaggcttataagaattgtttggt 50399050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 53391927 - 53391968
Alignment:
Q  308 atgagattgcatggttgaagaaatgctaataagaattgtttg 349  Q
    |||||| |||||||||||||||||||| |||| |||||||||    
T  53391927 atgagactgcatggttgaagaaatgcttataaaaattgtttg 53391968  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 425
Target Start/End: Complemental strand, 1645840 - 1645732
Alignment:
Q  317 catggttgaagaaatgctaataagaattgtttggtcttgataatatcaacaatatgtatatcttttttggtggtatattccataagaactccacatttaa 416  Q
    ||||||||||| ||  || |||||||||||||||| ||    |||||||||| ||| || |  |||||||| |   ||||||||||||||||||| ||||    
T  1645840 catggttgaaggaagacttataagaattgtttggtattacctatatcaacaagatgcatcttctttttggtagcccattccataagaactccacagttaa 1645741  T
Q  417 gtgtgcttg 425  Q
    | |||||||    
T  1645740 gcgtgcttg 1645732  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 4185648 - 4185704
Alignment:
Q  193 agggaagtgatcgtcagtgcacaagacatgaaaatgagcggctcctagttgcttcta 249  Q
    |||| ||||||||||  ||||||||||||||||||||| ||||| |||  |||||||    
T  4185648 aggggagtgatcgtcgttgcacaagacatgaaaatgagtggctcatagcagcttcta 4185704  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 27029402 - 27029434
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||| |||||||||||||    
T  27029402 attccataagaactccacagttaagtgtgcttg 27029434  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 44471340 - 44471292
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| ||||||| |||| | ||||||||    
T  44471340 attccataagaactccacagttaagcgtgcttgatttggagcaattttg 44471292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 53996130 - 53996098
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||| |||||||||||||    
T  53996130 attccataagaactccacagttaagtgtgcttg 53996098  T

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Target: scaffold0071 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 425
Target Start/End: Complemental strand, 45193 - 45164
Alignment:
Q  396 ccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||||||||||||||    
T  45193 ccataagaactccacatttaagtgtgcttg 45164  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 6747517 - 6747484
Alignment:
Q  30 aaagacttgtgttggtttgtagggtcaatcggca 63  Q
    ||||||||||||||||||||||||||| ||||||    
T  6747517 aaagacttgtgttggtttgtagggtcagtcggca 6747484  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 13122526 - 13122478
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| ||||||| |||| | ||||||||    
T  13122526 attccataagaactccacagttaagcgtgcttgatttggagcaattttg 13122478  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 29804807 - 29804855
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  29804807 attccataagaactccacagttaagcgtgcttgacttgaagcaattttg 29804855  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 20060361 - 20060329
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttg 425  Q
    ||||||||||||||||||| |||||||||||||    
T  20060361 attccataagaactccacagttaagtgtgcttg 20060329  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 52250331 - 52250379
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  52250331 attccataagaactccacagttaagcgtgcttgacttgaagcaattttg 52250379  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 52250668 - 52250716
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  52250668 attccataagaactccacagttaagcgtgcttgacttgaagcaattttg 52250716  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 52251005 - 52251053
Alignment:
Q  393 attccataagaactccacatttaagtgtgcttggtttgaaacaattttg 441  Q
    ||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  52251005 attccataagaactccacagttaagcgtgcttgacttgaagcaattttg 52251053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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