View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5208_low_5 (Length: 418)
Name: NF5208_low_5
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5208_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 40173882 - 40173479
Alignment:
| Q |
1 |
aaccagtcattacctcaaaaaacatctaattgtaggagctgtcatttcaaacttcaagaaattcagaacagaggactccatctccaacacctgcaataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40173882 |
aaccagtcattacctcaaaaaacatctaattgtaggagctgtcatttcaaacttcaagaaattcagaacagaggactccatctccagcacctgcaataat |
40173783 |
T |
|
| Q |
101 |
atcatatatctatagttttaggatactaaaaccaaataaaaaggtatccaaagctgcagttatgaatcaaatcaatagataaataacaaaacccaaacct |
200 |
Q |
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| T |
40173782 |
atcatatatctatagttttaggatactaaaaccaaataaaaagatatccaaagctgcagttatgaatcaaattaatagataaataacaaaacccaaacct |
40173683 |
T |
|
| Q |
201 |
gctccttagaatatgtattatcagttacataacagaactcttccaccttaggtgcacagatctcctcgtatttactgccaaattcaaaccaatttatata |
300 |
Q |
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| T |
40173682 |
gctccttagaatatgtattatcagttacataacagaactcttccaccttaggtgcacagatctcctcgtatttactgccaaattcaaaccaatt--tata |
40173585 |
T |
|
| Q |
301 |
gccttatggaatacaaatacaaataaaaatgcaggacaaacacaagaaaacaattgaaacaagcactg----gtgaaacaaattaagtagatattccata |
396 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| |||||| |||||||||||||||| | || |
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| T |
40173584 |
gccttatggaatacaaatacaaataaaaatgcagtacaaacacaagaaaacaatttaatcaagcactgtatagtgaaaaaaattaagtagatattactta |
40173485 |
T |
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| Q |
397 |
acaaac |
402 |
Q |
| |
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|||||| |
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| T |
40173484 |
acaaac |
40173479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 40181563 - 40181494
Alignment:
| Q |
212 |
tatgtattatcagttacataacagaactcttccaccttaggtgcacagatctcctcgtatttactgccaa |
281 |
Q |
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||||| |||||||||| |||||| || || ||||||| ||||||||| |||||||| ||||||||||||| |
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| T |
40181563 |
tatgtgttatcagttatataacaaaattcctccacctgaggtgcacaaatctcctcatatttactgccaa |
40181494 |
T |
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