View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5208_low_6 (Length: 411)

Name: NF5208_low_6
Description: NF5208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5208_low_6
NF5208_low_6
[»] chr2 (5 HSPs)
chr2 (16-364)||(37332091-37332437)
chr2 (288-364)||(37332971-37333047)
chr2 (313-364)||(37332885-37332936)
chr2 (288-321)||(37332452-37332485)
chr2 (284-352)||(44437925-44437993)
[»] chr4 (6 HSPs)
chr4 (293-352)||(44360097-44360155)
chr4 (293-352)||(54470217-54470276)
chr4 (158-231)||(10209179-10209251)
chr4 (293-346)||(50471542-50471595)
chr4 (284-352)||(35555851-35555919)
chr4 (284-352)||(42285904-42285972)
[»] chr1 (1 HSPs)
chr1 (284-346)||(10272275-10272337)
[»] chr5 (3 HSPs)
chr5 (284-352)||(10082943-10083011)
chr5 (284-352)||(33667226-33667294)
chr5 (293-352)||(31636133-31636192)
[»] chr3 (1 HSPs)
chr3 (291-345)||(31453149-31453203)
[»] chr8 (1 HSPs)
chr8 (282-315)||(10080109-10080142)
[»] chr7 (1 HSPs)
chr7 (284-352)||(36514411-36514479)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 37332091 - 37332437
Alignment:
Q  16 tttcaacttttaaattctataaaaaatacgacggattgagggaaattaagaagacaaaccctgaagaaattaggtaggccgatttgaagnnnnnnnncat 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||        |||    
T  37332091 tttcaacttttaaattctataaaaaatatgacggattgagggaaattaagaagacaaaccctgaagaagt-aggtaggccgatttgaagaaaaaaaacat 37332189  T
Q  116 gtatggaaagagcgcaagtactccaactcatcaatggaaaaatctatctaaaaccttgtatttctccaactcattatatatctaggccattcttaatagt 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37332190 gtatggaaagagcgcaagtacgccaactcatcaatggaaaaatctatctaaaaccttgtatttctccaactcattatatatctaggccattcttaatagt 37332289  T
Q  216 ttctctcatggttttttctagatcgttccctcgagtaatttgactccactctaactttagtaccctaaaatcctcacgtcttctctctacatgcccaaac 315  Q
    |||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  37332290 ttctctcatgattttttctaggtcggtccctccagtaatttgactccactctaactttag-accctaaaatcctcacgtcttctctctatatgccgaaac 37332388  T
Q  316 aactttgatctagtttctatcatcttttctattatagttgttatcccaa 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37332389 aactttgatctagtttctatcatcttttctattatagttgttatcccaa 37332437  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 288 - 364
Target Start/End: Original strand, 37332971 - 37333047
Alignment:
Q  288 ctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatagttgttatcccaa 364  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37332971 ctcacgtcttctctctacatgccgaaacaactttgatctagtttctatcatcttttctattatagttgttatcccaa 37333047  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 37332885 - 37332936
Alignment:
Q  313 aacaactttgatctagtttctatcatcttttctattatagttgttatcccaa 364  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37332885 aacaactttgatctagtttctattatcttttctattatagttgttatcccaa 37332936  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 321
Target Start/End: Original strand, 37332452 - 37332485
Alignment:
Q  288 ctcacgtcttctctctacatgcccaaacaacttt 321  Q
    ||||||||||||||||||||||| ||||||||||    
T  37332452 ctcacgtcttctctctacatgccgaaacaacttt 37332485  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 44437925 - 44437993
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||| || |||||||||||||||||| |||| || |   ||||||||||| ||||||||||| |||||    
T  44437925 aatccacaagtcttctctctacatgccgaaaccacctatgtctagtttctaccatcttttctactatag 44437993  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 44360155 - 44360097
Alignment:
Q  293 gtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||||||||||||||||||||||||  | |||||||||||| ||||||||||| |||||    
T  44360155 gtcttctctctacatgcccaaacaac-ctaatctagtttctaccatcttttctactatag 44360097  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 54470276 - 54470217
Alignment:
Q  293 gtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||||||||||||||||||||| ||||   ||||||||| | ||||||||||| |||||    
T  54470276 gtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactatag 54470217  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 10209251 - 10209179
Alignment:
Q  158 tctatctaaaaccttgtatttctccaactcattatatatctaggccattcttaatagtttctctcatggttttt 231  Q
    |||||| |||||| ||| |||||||||||||||| || |||||  | ||||||||||||||||| || ||||||    
T  10209251 tctatcaaaaaccatgtctttctccaactcatta-atctctagatccttcttaatagtttctcttatagttttt 10209179  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 50471595 - 50471542
Alignment:
Q  293 gtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttcta 346  Q
    ||||||||||||||||||||||| ||||  | |||||||| | |||||||||||    
T  50471595 gtcttctctctacatgcccaaaccacttaaacctagtttccaccatcttttcta 50471542  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 35555851 - 35555919
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||| || |||||||||||| |||||||||| || |   ||||||||||| ||||||||||| |||||    
T  35555851 aatccacaggtcttctctctaaatgcccaaaccacctaagtctagtttctaccatcttttctactatag 35555919  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 42285904 - 42285972
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||| || ||||||||| ||||||||||||| || |   ||||||||||| ||||||||||| |||||    
T  42285904 aatccacaggtcttctctatacatgcccaaaccacctaagtctagtttctaccatcttttctactatag 42285972  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 10272337 - 10272275
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttcta 346  Q
    ||||| || |||||||||||||||||| |||| |||||  ||||||||||| |||||||||||    
T  10272337 aatccacaggtcttctctctacatgccaaaaccactttagtctagtttctaccatcttttcta 10272275  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 10082943 - 10083011
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||| || |||||||||||||||||| |||| ||||   ||||||||||| ||||||||||| |||||    
T  10082943 aatccacaagtcttctctctacatgccgaaaccacttaagtctagtttctaccatcttttctactatag 10083011  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 33667294 - 33667226
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||| || ||||||||||||||||||||||| || |   ||||||||||| ||||||||||| |||||    
T  33667294 aatccacaggtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactatag 33667226  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 31636133 - 31636192
Alignment:
Q  293 gtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||||||||||||||||||||| || |   ||||||||||| ||||||||||| |||||    
T  31636133 gtcttctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactatag 31636192  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 31453149 - 31453203
Alignment:
Q  291 acgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttct 345  Q
    |||||||||||||||||||| ||||||| |   ||||||||||| ||||||||||    
T  31453149 acgtcttctctctacatgccaaaacaacctaagtctagtttctaccatcttttct 31453203  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 315
Target Start/End: Original strand, 10080109 - 10080142
Alignment:
Q  282 aaaatcctcacgtcttctctctacatgcccaaac 315  Q
    |||||||||| |||||||||||||||||||||||    
T  10080109 aaaatcctcaggtcttctctctacatgcccaaac 10080142  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 36514411 - 36514479
Alignment:
Q  284 aatcctcacgtcttctctctacatgcccaaacaactttgatctagtttctatcatcttttctattatag 352  Q
    ||||| || ||| ||||||||||||||||||| || |   ||||||||||| ||||||||||| |||||    
T  36514411 aatccacaagtcgtctctctacatgcccaaaccacctaagtctagtttctaccatcttttctactatag 36514479  T

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