View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209-Insertion-1 (Length: 456)
Name: NF5209-Insertion-1
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 6 - 443
Target Start/End: Complemental strand, 52956182 - 52955742
Alignment:
| Q |
6 |
cacattagagccattctcactaagtttgatttcacgaccctttcaaatattgaaccaaagcatttctggcaagaaaaaa---taacctggtcaaataata |
102 |
Q |
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| T |
52956182 |
cacattagagccattctcactaagtttgatttcacgaccctttcaaatattgaaccaaagcatttctgccaaaaaaaaaaaataacatggtgaaataata |
52956083 |
T |
|
| Q |
103 |
tgtaagattagcacatcttggttcctactaaattatataagatctaa-ttggtcaagtaacctcttatgtacaaaatttgcatgaacaaatcctatcaag |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| || |||||||| |
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| T |
52956082 |
tgtaagattagcacatcttggttcctactaaattatataagatctaacttggtcaaataacctcttatgtataaaatttgcatgaacagattctatcaag |
52955983 |
T |
|
| Q |
202 |
tctctaatggtcattcnnnnnnnnnnnnnngaaaacaacatatattataatagccgattgcaaagcacgacataaatggccagaaacgggactacaaatg |
301 |
Q |
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||||| |||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52955982 |
tctctgatggtcattctttttttcttttt-gaaaacaacatatattataacagccgactgcaaagcacgacataaatggccagaaacaggactacaaatg |
52955884 |
T |
|
| Q |
302 |
cagcctagtgcatacacaaaggcggtcaacagagtcataaataaaaaacaacaccattcaatcgcaacaactcctaaaaactgaaaaagctggacacaaa |
401 |
Q |
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| T |
52955883 |
cagcctagtgcattcacaaaggtggtcgacagagccataaataaaaaacagcaccattcaatcgcaacagctcctaaaaactggaaaagctggacacaaa |
52955784 |
T |
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| Q |
402 |
atcagtaaaattgaacaccttagaagtacccaaaactgcaca |
443 |
Q |
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| T |
52955783 |
atcagtaaaattgaacaccttagcagtacccaaaacagcaca |
52955742 |
T |
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Back To:
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 3627368 - 3627245
Alignment:
| Q |
63 |
aagcatttctggcaagaaaaaataacctggtcaaataatatgtaagattagcacatcttggttcctactaaattatataagatctaa-ttggtcaagtaa |
161 |
Q |
| |
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|||||||| || ||| |||||||||| || || |||||||| ||||||||||||| ||||||||| | ||||||||||| | ||| || ||||| ||| |
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| T |
3627368 |
aagcatttttgccaacaaaaaataacttg-tctaataatatataagattagcacagtttggttccttcaaaattatataaaaaataacttagtcaaataa |
3627270 |
T |
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| Q |
162 |
cctcttatgtacaaaatttgcatgaa |
187 |
Q |
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|| | |||||||||||||| |||||| |
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| T |
3627269 |
cc-cctatgtacaaaattttcatgaa |
3627245 |
T |
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