View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5209_high_11 (Length: 245)
Name: NF5209_high_11
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 12587179 - 12587325
Alignment:
| Q |
13 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12587179 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca |
12587278 |
T |
|
| Q |
113 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12587279 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
12587325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 27323196 - 27323308
Alignment:
| Q |
18 |
acacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacata |
117 |
Q |
| |
|
|||||||||||||||||||| || |||||| |||||| ||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
27323196 |
acacttaaagcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaataaagtttacacaatcaacata |
27323295 |
T |
|
| Q |
118 |
aattcaatatcaa |
130 |
Q |
| |
|
||||||||||||| |
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|
| T |
27323296 |
aattcaatatcaa |
27323308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 35036209 - 35036079
Alignment:
| Q |
18 |
acacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcactta----tcaaaccctaacaataaagtttacacaatcaa |
113 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| | ||| |||||||||||||||| || |||||| | |||||||||||||||||||||||| ||||| |
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|
| T |
35036209 |
acacttaaaggaataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacacttaattattaaaccctaacaataaagtttacactatcaa |
35036110 |
T |
|
| Q |
114 |
cataaattcaatatcaacaaggtaataatag |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |
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|
| T |
35036109 |
cataaattcaatatcaacaaagtaataatag |
35036079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 27324409 - 27324442
Alignment:
| Q |
126 |
atcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
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|
| T |
27324409 |
atcaacaaggtgataatagatgttaactctcatt |
27324442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 21880177 - 21880323
Alignment:
| Q |
13 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
21880177 |
cacaaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaattttacacaatca |
21880276 |
T |
|
| Q |
113 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21880277 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
21880323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 6901163 - 6901017
Alignment:
| Q |
13 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6901163 |
cacaaacacttaaagcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaaccctaacaataaagtttacacaatca |
6901064 |
T |
|
| Q |
113 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6901063 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
6901017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 49602729 - 49602875
Alignment:
| Q |
13 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
49602729 |
cacaaacacttaaagcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttgtacaatca |
49602828 |
T |
|
| Q |
113 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49602829 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
49602875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 22970448 - 22970302
Alignment:
| Q |
13 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
22970448 |
cacatacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaattttttacaatca |
22970349 |
T |
|
| Q |
113 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22970348 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
22970302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 22329685 - 22329830
Alignment:
| Q |
13 |
cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
112 |
Q |
| |
|
|||| |||||||||| |||||||||| || ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22329685 |
cacaaacacttaaagtaataaaatagcagcaaaattcaagattgta-aataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca |
22329783 |
T |
|
| Q |
113 |
acataaattcaatatcaacaaggtaataatagatgttaactctcatt |
159 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22329784 |
acataaattcaatatcaacaacttaataatagatgttaactctcatt |
22329830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 35360378 - 35360477
Alignment:
| Q |
43 |
aaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaaggtaataat |
142 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| |||| || ||||||||||||||||||| ||| ||||||| || || |||||| |||||||||||| |
|
|
| T |
35360378 |
aaagtttaaaattgttgaataattccaaataaacact-attaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggcaaggtaataat |
35360476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 3497353 - 3497398
Alignment:
| Q |
18 |
acacttaaagcaataaaatagtagtaaagtttaagattgttgaata |
63 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3497353 |
acacttaaagcaataaaatagtcgtaaagttcaagattgttgaata |
3497398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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