View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209_high_8 (Length: 293)
Name: NF5209_high_8
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 28169268 - 28169531
Alignment:
| Q |
15 |
caaaggagatgaggttgacttcttaagttgcttaatatttgtgtatcaataattcctttcctcgacaatcgatgatccataaatcaacaaaaaagataga |
114 |
Q |
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| T |
28169268 |
caaaggagatgaggttgacttcttaagttgcttaatatttgtgtataaagaattcctttcctcgacaatcgatgatccataaatcaacaaaaaagataga |
28169367 |
T |
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| Q |
115 |
ggaataggtgttatacttttttcaaaaatcaactctccatcaaccaagatatatctcctatcatccgtaaagcactttaatttcttgaaataacgagtgt |
214 |
Q |
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| T |
28169368 |
ggaataggtgttatacttttttcgaaagtcaactctccatcaaccaagataaatctcctatcatccgtaaagcactttgatttcatgaaataacgagtgt |
28169467 |
T |
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| Q |
215 |
cccaagctaatatcaaacatccacttcttccttggcccttaactcttgatattgtcgctggaaa |
278 |
Q |
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| T |
28169468 |
cccaagctaatatcaaacatccacttcttccttggcccttaactcttgatattgtcgctggaaa |
28169531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 71 - 278
Target Start/End: Original strand, 8558782 - 8558991
Alignment:
| Q |
71 |
tttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaataggtgttatacttttttcaaaaatcaactctccatcaaccaagatatatct |
170 |
Q |
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| T |
8558782 |
tttcctcgacagtcattgatccataaatcaacaaaaaagatataggaataggcgttgtacttttttcaagaaacaactctccatcaaccaagatatatct |
8558881 |
T |
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| Q |
171 |
cctatcatccgtaaagcactttaatttcttgaaataacgagtgtcccaagctaatatc--aaacatccacttcttccttggcccttaactcttgatattg |
268 |
Q |
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| T |
8558882 |
cctatcatccataaagcactttgatttcttgaaataacgagtgtccaaagctaatatcaaaaacctccacttcttccttggcccttaacttctgatattg |
8558981 |
T |
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| Q |
269 |
tcgctggaaa |
278 |
Q |
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| T |
8558982 |
tcgctggaaa |
8558991 |
T |
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