View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209_low_11 (Length: 270)
Name: NF5209_low_11
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 26610164 - 26610056
Alignment:
| Q |
157 |
ggattggaaccgcaagagcaattttaccaaattattatgttgtttatgttttacattttgtgtcacattgaaaccacttatttggtttggtatacttagg |
256 |
Q |
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| T |
26610164 |
ggattggaaccgcaagagcaattttaccaaattattatattgtttatgttttagactttgtgtcacattgaaaccacttatttggttttgtatacttagg |
26610065 |
T |
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| Q |
257 |
tctcttgtt |
265 |
Q |
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| T |
26610064 |
tctcttgtt |
26610056 |
T |
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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 9599398 - 9599343
Alignment:
| Q |
3 |
cgatcaaaatgacgatttctcaattttttccattctatcccatcttggagtataat |
58 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9599398 |
cgatcaaaatgactatttctcaattttttccattctatcccatcttggagtataat |
9599343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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