View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5209_low_13 (Length: 245)

Name: NF5209_low_13
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5209_low_13
NF5209_low_13
[»] chr8 (4 HSPs)
chr8 (13-159)||(12587179-12587325)
chr8 (18-130)||(27323196-27323308)
chr8 (18-144)||(35036079-35036209)
chr8 (126-159)||(27324409-27324442)
[»] chr1 (1 HSPs)
chr1 (13-159)||(21880177-21880323)
[»] chr6 (1 HSPs)
chr6 (13-159)||(6901017-6901163)
[»] chr3 (1 HSPs)
chr3 (13-159)||(49602729-49602875)
[»] chr7 (1 HSPs)
chr7 (13-159)||(22970302-22970448)
[»] chr2 (1 HSPs)
chr2 (13-159)||(22329685-22329830)
[»] chr5 (2 HSPs)
chr5 (43-143)||(35360378-35360477)
chr5 (18-63)||(3497353-3497398)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 12587179 - 12587325
Alignment:
Q  13 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12587179 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatca 12587278  T
Q  113 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12587279 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 12587325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 27323196 - 27323308
Alignment:
Q  18 acacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacata 117  Q
    ||||||||||||||||||||  || |||||| |||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  27323196 acacttaaagcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaataaagtttacacaatcaacata 27323295  T
Q  118 aattcaatatcaa 130  Q
    |||||||||||||    
T  27323296 aattcaatatcaa 27323308  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 35036209 - 35036079
Alignment:
Q  18 acacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcactta----tcaaaccctaacaataaagtttacacaatcaa 113  Q
    |||||||||| ||||||||||| | |||||| | ||| |||||||||||||||| || ||||||    | |||||||||||||||||||||||| |||||    
T  35036209 acacttaaaggaataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacacttaattattaaaccctaacaataaagtttacactatcaa 35036110  T
Q  114 cataaattcaatatcaacaaggtaataatag 144  Q
    |||||||||||||||||||| ||||||||||    
T  35036109 cataaattcaatatcaacaaagtaataatag 35036079  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 27324409 - 27324442
Alignment:
Q  126 atcaacaaggtaataatagatgttaactctcatt 159  Q
    ||||||||||| ||||||||||||||||||||||    
T  27324409 atcaacaaggtgataatagatgttaactctcatt 27324442  T

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Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 21880177 - 21880323
Alignment:
Q  13 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21880177 cacaaacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaattttacacaatca 21880276  T
Q  113 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21880277 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 21880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 6901163 - 6901017
Alignment:
Q  13 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 112  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6901163 cacaaacacttaaagcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaaccctaacaataaagtttacacaatca 6901064  T
Q  113 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6901063 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 6901017  T

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Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 49602729 - 49602875
Alignment:
Q  13 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 112  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  49602729 cacaaacacttaaagcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttgtacaatca 49602828  T
Q  113 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  49602829 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 49602875  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 22970448 - 22970302
Alignment:
Q  13 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  |||||||    
T  22970448 cacatacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaattttttacaatca 22970349  T
Q  113 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22970348 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 22970302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 22329685 - 22329830
Alignment:
Q  13 cacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 112  Q
    |||| |||||||||| |||||||||| || ||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329685 cacaaacacttaaagtaataaaatagcagcaaaattcaagattgta-aataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatca 22329783  T
Q  113 acataaattcaatatcaacaaggtaataatagatgttaactctcatt 159  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||    
T  22329784 acataaattcaatatcaacaacttaataatagatgttaactctcatt 22329830  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 143
Target Start/End: Original strand, 35360378 - 35360477
Alignment:
Q  43 aaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaaggtaataat 142  Q
    ||||||||| ||||||||||||| |||||||| |||| || |||||||||||||||||||  ||| ||||||| || || ||||||  ||||||||||||    
T  35360378 aaagtttaaaattgttgaataattccaaataaacact-attaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggcaaggtaataat 35360476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 3497353 - 3497398
Alignment:
Q  18 acacttaaagcaataaaatagtagtaaagtttaagattgttgaata 63  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||    
T  3497353 acacttaaagcaataaaatagtcgtaaagttcaagattgttgaata 3497398  T

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