View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209_low_16 (Length: 201)
Name: NF5209_low_16
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 9230169 - 9229982
Alignment:
| Q |
14 |
attattctatctgtggctagttcatcgttgtacatgttatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttta |
113 |
Q |
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| T |
9230169 |
attattctatctgtggctagttcctcgttgtacatgttatatcaaagaagaaaactcttgaaactaaaagagaaattctttaaacaaaatggcggtttca |
9230070 |
T |
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| Q |
114 |
tttttctacgccaactttttaaaaaagaa-acgcatcagggactgcccaaattttcaaagaagaagaaaattagaaagctacccacaa |
200 |
Q |
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| T |
9230069 |
ttttgctacgccaactttctaaaagagaagacgcatcaggaactactcaaattttcaaagaagatgaacttaagaaagctaccaacaa |
9229982 |
T |
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