View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209_low_4 (Length: 451)
Name: NF5209_low_4
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 17159753 - 17159323
Alignment:
| Q |
17 |
aatatttccacctgtaatgataattatagcgataaagcccaaataagttacaccttatccccctatctttgtttaatttttcatgctaaaacattgagta |
116 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
17159753 |
aatattgccacctgtaatgataattatgccgataaagcccaaataagttacaccttatccccctatctttgttaaatttttcatgctaaaacattgagga |
17159654 |
T |
|
| Q |
117 |
caatttcaaattcaagcatggggaattcttcatcttattattctttaatctatgatttcttttgtttttattgcttttattaaaacaatcaaatgactcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
17159653 |
caatttcaaattcaagcatggggaattcttcatcttattattctttaatctatgatttcttttgtttttattgcttgtattaaaataatcaaatgactcc |
17159554 |
T |
|
| Q |
217 |
ttgcttgaaaaaccttgttcacatcttttatttatgactcttgttcttgtatatctgtgggtagaaggcaaataaatgaacatgtggtgaaccaacttta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
17159553 |
ttgcttgaaaaaccttgttcacatcttttatttatgactcttgttcttgtgtatctgtgggtagaaggcaaataaatcaacatgtggtgaaccaac-tta |
17159455 |
T |
|
| Q |
317 |
gatttga-----cagagagtttgattcactagtttccatcgaatataaaccatgtaaatgtgaga------ttaannnnnnnngccctttttccttgttt |
405 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
17159454 |
gatttgataagttagagagtttgattcactagtttccatcgaatataaaccatgtaaatgtgagattttttttttttttttttgccctttctccttgttt |
17159355 |
T |
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| Q |
406 |
tgagtgaaaaatctaatatattactttcatct |
437 |
Q |
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| T |
17159354 |
tgagtgaaaaatctaatatattactttcatct |
17159323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 17153560 - 17153990
Alignment:
| Q |
17 |
aatatttccacctgtaatgataattatagcgataaagcccaaataagttacaccttatccccctatctttgtttaatttttcatgctaaaacattgagta |
116 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
17153560 |
aatattgccaccagtaatgataattatgccgataaagcccaaataagttacaccttatccccctatctttgtttaatttttcatgctataacattgagga |
17153659 |
T |
|
| Q |
117 |
caatttcaaattcaagcatggggaattcttcatcttattattctttaatctatgatttcttttgtttttattgcttttattaaaacaatcaaatgactcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17153660 |
caatttcaaattcaagcatggggaattcttcatcttattattctttaatctatgatttcttttgtttttattacttttattaaaacaatcaaatgactcc |
17153759 |
T |
|
| Q |
217 |
ttgcttgaaaaaccttgttcacatcttttatttatgactcttgttcttgtatatctgtgggtagaaggcaaataaatgaacatgtggtgaaccaacttta |
316 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
17153760 |
ttgcttgaaaaaccttgttcacatcttttatatataactcttgttcttgtgtatctatgggtagaaggcaaataaatcaacatgttgtgaaccaacttta |
17153859 |
T |
|
| Q |
317 |
gatttga-----cagagagtttgattcactagtttccatcgaatataaaccatgtaaatgtgagattaa----nnnnnnnngccctttttccttgttttg |
407 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
17153860 |
gatttgataagttagagagtttgattcactagtttccattgaatataaaccatgtaaatgtgaggttaattttttttttttgtcctttttccttgttttg |
17153959 |
T |
|
| Q |
408 |
agtgaaaaatctaatata-ttactttcatct |
437 |
Q |
| |
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|||||||||||| ||||| |||||||||||| |
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| T |
17153960 |
agtgaaaaatcttatatatttactttcatct |
17153990 |
T |
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