View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5209_low_6 (Length: 408)

Name: NF5209_low_6
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5209_low_6
NF5209_low_6
[»] chr7 (1 HSPs)
chr7 (1-397)||(17158499-17158902)
[»] chr1 (2 HSPs)
chr1 (1-397)||(11780083-11780483)
chr1 (138-252)||(10424692-10424805)
[»] chr2 (3 HSPs)
chr2 (44-374)||(12101751-12102082)
chr2 (74-190)||(22171074-22171190)
chr2 (74-190)||(22172402-22172518)
[»] chr6 (3 HSPs)
chr6 (24-378)||(14977470-14977830)
chr6 (56-237)||(11776307-11776487)
chr6 (140-252)||(9352405-9352516)
[»] chr5 (2 HSPs)
chr5 (56-385)||(5781861-5782196)
chr5 (61-237)||(19069534-19069709)
[»] chr3 (5 HSPs)
chr3 (138-252)||(16311592-16311705)
chr3 (138-252)||(16313983-16314096)
chr3 (138-252)||(18488376-18488489)
chr3 (138-252)||(18492586-18492699)
chr3 (138-252)||(18494977-18495090)
[»] chr4 (1 HSPs)
chr4 (59-252)||(33041474-33041666)
[»] chr8 (1 HSPs)
chr8 (61-193)||(29820419-29820551)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 17158902 - 17158499
Alignment:
Q  1 gttacttctacttcagcagttgttacttctcagttgacagtccctatgcctaggacgtcattgtcgtcaacacctttcagctttccactacataacgtgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  17158902 gttacttctacttcagcagttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgt 17158803  T
Q  101 ttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17158802 ttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacgatgaagtgcattctgagagagtgggatc 17158703  T
Q  201 agtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcaacactctcggatgatctggagcataatcattcgcaccc--- 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||       
T  17158702 agtcgcatccgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatgatgtggagcataatcattcgcaccccta 17158603  T
Q  298 ----ttggtggagagtcccaaggggggccatgagcatgtactacattcatcaattgttgagcacaatgacgtgcatgaggtatctctagaattgccacag 393  Q
        |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||    
T  17158602 gtagttggtggagagtcccaagggggaccatgagcatgtactacattcatcaattgttaagcacaatgacgtgcatgaggtatctctggaatcgccacag 17158503  T
Q  394 gttc 397  Q
    ||||    
T  17158502 gttc 17158499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 11780483 - 11780083
Alignment:
Q  1 gttacttctacttcagcagttgttacttctcagttgacagtccctatgcctaggacgtcattgtcgtcaacacctttcagctttccactacataacgtgt 100  Q
    |||| |||||||||||||||||||||||||||  |||| ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  11780483 gttaattctacttcagcagttgttacttctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgt 11780384  T
Q  101 ttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatc 200  Q
    |||||| | ||||||||||  |||||| ||| |||||||||||||||||||||||||||| | ||  ||| |||||| |||||||||||||||| | | |    
T  11780383 ttgacagcgtttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccccgatt--gcatgatgaaatgcattctgagagagt-gaagc 11780287  T
Q  201 agtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgttactgcaacactctcggatgatctggagcataatcattcgcaccc--- 297  Q
    ||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| |||| |||||||||||| |||| ||||||||||||| |||       
T  11780286 agtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccaca 11780187  T
Q  298 ----ttggtggagagtcccaaggggggccatgagcatgtactacattcatcaattgttgagcacaatgacgtgcatgaggtatctctagaattgccacag 393  Q
         ||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||| |||| || ||||||||||||   |||| |||||||    
T  11780186 ggagctggtggagagtccgaagggtgcccatgagcatgtaccacattcatcaattgttgagcacgatgatgtacatgaggtatctaaggaatcgccacag 11780087  T
Q  394 gttc 397  Q
    ||||    
T  11780086 gttc 11780083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 252
Target Start/End: Complemental strand, 10424805 - 10424692
Alignment:
Q  138 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    ||||||||| ||| |||||||||   ||||||||| ||| ||||||||||||||||| ||| || | |||||||| |||||||||||  |||||||||||    
T  10424805 gccagtgttagaatttgtttcccctgttgcgcacgttgacgtgcattctgagagagt-ggaacaattgcatctgacatcgcgggaggtattggagaaccc 10424707  T
Q  238 tgtggttgacgatgt 252  Q
     ||||| || |||||    
T  10424706 cgtggtggatgatgt 10424692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 374
Target Start/End: Original strand, 12101751 - 12102082
Alignment:
Q  44 ctatgcctaggacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagt 143  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||  |||| ||||  || || | |||    
T  12101751 ctatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagt 12101850  T
Q  144 gtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggt 243  Q
    |||||||||| ||||||   ||| ||||||||| |||||| |||||||||  ||| ||  | |||  || ||||||||||||||||||||||||  |||     
T  12101851 gtttgaaattatttccccaattgtgcacgatgacgtgcatcctgagagag-cggagcaaacacattcgacatcgcgggaggagttggagaaccccatggc 12101949  T
Q  244 tgacgatgttactgcaacactctcggatgatctggagcataatcattcgcaccc-------ttggtggagagtcccaaggggggccatgagcatgtacta 336  Q
    ||||||||||||| | | ||    |||  || |     |||||||||||| |||        ||||||||||||||||||| | | |||||||||||| |    
T  12101950 tgacgatgttactacgatacatgtggaacatat-----ataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgtacca 12102044  T
Q  337 cattcatcaattgttgagcacaatgacgtgcatgaggt 374  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12102045 cattcatcaattgttgagcacgatgacgtgcatgaggt 12102082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 22171190 - 22171074
Alignment:
Q  74 ctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacga 173  Q
    |||||||||||||| |||| || |||||||| || ||||||  || | || ||||||   ||| ||||||||| ||| |||||||||   ||||||| |     
T  22171190 ctttcagctttccattacacaatgtgtttgataaaatttctcctggagagttgccacatactatgccagtgttagaagttgtttcccctattgcgcatgt 22171091  T
Q  174 tgaagtgcattctgaga 190  Q
    ||| |||||||||||||    
T  22171090 tgatgtgcattctgaga 22171074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 22172518 - 22172402
Alignment:
Q  74 ctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacga 173  Q
    |||||||||||||| |||| || |||||||| || ||||||  || | || ||||||   ||| ||||||||| ||| |||||||||   ||||||| |     
T  22172518 ctttcagctttccattacacaatgtgtttgataaaatttctcctggagagttgccacatactatgccagtgttagaagttgtttcccctattgcgcatgt 22172419  T
Q  174 tgaagtgcattctgaga 190  Q
    ||| |||||||||||||    
T  22172418 tgatgtgcattctgaga 22172402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 24 - 378
Target Start/End: Original strand, 14977470 - 14977830
Alignment:
Q  24 tacttctcagttgacagtccctatgcctaggacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaag 123  Q
    |||||||||| |||  |||||| |||| |||||||| ||||| |||||| |||| ||||| ||| |||| ||| ||||||| |  ||||||||||| |||    
T  14977470 tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag 14977569  T
Q  124 ctgccactcgctacgccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggag 223  Q
     |||||   ||||| |||||| ||||  |||| ||||   ||||||||||||| |||||||| |||||||| ||| |||||||||| || ||||||||||    
T  14977570 ttgccagaagctacaccagtgattgagtttgtgtccccagttgcgcacgatgacgtgcattccgagagagt-ggagcagtcgcatccgacatcgcgggag 14977668  T
Q  224 gagttggagaaccctgtggttgacgatgttactgcaacactctcggatgatctggagcataatcattcgcaccc-------ttggtggagagtcccaagg 316  Q
    ||| || ||| |||   |||||||||||||||||| || || ||  ||||| |||| ||||||||||||  |||        ||||||||||||||||||    
T  14977669 gaggtgcagatcccaacggttgacgatgttactgctacgctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaagg 14977768  T
Q  317 ggggccatgagcatgtactacattcatcaattgttgagcacaatgacgtgcatgaggtatct 378  Q
    |   |||||||||||| | ||||||||| |||||| ||||  ||||| ||||||| ||||||    
T  14977769 gttcccatgagcatgttccacattcatccattgtttagcatgatgacatgcatgatgtatct 14977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 11776487 - 11776307
Alignment:
Q  56 cgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgt 155  Q
    |||| ||||||||||   |||||||||||||| ||||||| | ||||||||| ||||||  |||  || ||||||  | ||| |||||||| ||  ||||    
T  11776487 cgtctttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgt 11776388  T
Q  156 ttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    |||||   ||| ||||||||| ||||||||||||||||| ||| |||| ||||| |  ||||||||||||||||||||||||    
T  11776387 ttcccctgttgtgcacgatgatgtgcattctgagagagt-ggagcagttgcatcagtcatcgcgggaggagttggagaaccc 11776307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 252
Target Start/End: Complemental strand, 9352516 - 9352405
Alignment:
Q  140 cagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctg 239  Q
    ||||||| ||| |||||||||   ||||||||  |||  |||||||||||||||||| | |||| || ||||| |||||| |||| ||||||||||||||    
T  9352516 cagtgttagaatttgtttcccctgttgcgcacattgacatgcattctgagagagtggaa-cagttgcgtctgacatcgcgagaggtgttggagaaccctg 9352418  T
Q  240 tggttgacgatgt 252  Q
    |||| || |||||    
T  9352417 tggtggatgatgt 9352405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 56 - 385
Target Start/End: Complemental strand, 5782196 - 5781861
Alignment:
Q  56 cgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgt 155  Q
    |||| ||||||||||   |||||||||||||| |||| || |||||  | |  ||||||  |||  ||||||||   |||||||||||||| ||  ||||    
T  5782196 cgtctttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgt 5782097  T
Q  156 ttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgttac 255  Q
    |||||   ||||||||||||| ||||||||||||||||  ||| |||| ||||| || ||||||| |||||||||||||||    ||| || ||||||||    
T  5782096 ttcccttgttgcgcacgatgacgtgcattctgagagag-aggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttac 5781998  T
Q  256 tgcaacactctcggatgatctggagcataatcattcgcaccc-------ttggtggagagtcccaaggggggccatgagcatgtactacattcatcaatt 348  Q
    ||  ||||| || |||||| |||| || |||||||||  |||        |||||||||||||||||||   |||||||| ||||  || ||||||  ||    
T  5781997 tgttacactttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatccctt 5781898  T
Q  349 gttgagcacaatgacgtgcatgaggtatctctagaat 385  Q
     |||||||   ||| ||||||||||||||| ||||||    
T  5781897 attgagcattttgaggtgcatgaggtatctgtagaat 5781861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 19069709 - 19069534
Alignment:
Q  61 ttgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttccc 160  Q
    ||||||||||   |||||||||||||| |||| || | ||||||||| ||||||  | |  |||||||||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  161 agtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
       ||||||||||||| ||||||||||||||||  ||| | || ||||| || |||||| |||||||||||||||||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagag-aggagcggttgcatcagacatcgcgagaggagttggagaaccc 19069534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 16311592 - 16311705
Alignment:
Q  138 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    ||||||||| ||| |||||||||   ||||||||  ||| ||||||| ||||| ||||| | || | |||||||| ||||||||||| ||||||||||||    
T  16311592 gccagtgttagaatttgtttcccctgttgcgcacattgatgtgcattttgagaaagtggaa-caattgcatctgacatcgcgggaggtgttggagaaccc 16311690  T
Q  238 tgtggttgacgatgt 252  Q
     ||||| || |||||    
T  16311691 cgtggtggatgatgt 16311705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 16313983 - 16314096
Alignment:
Q  138 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    ||||||||| ||| |||||||||   ||||||||| ||| ||||||| ||||| ||||| | || | |||||||| ||| ||||||| ||||||||||||    
T  16313983 gccagtgttagaatttgtttcccctattgcgcacgttgatgtgcattttgagaaagtggaa-caattgcatctgacatcacgggaggtgttggagaaccc 16314081  T
Q  238 tgtggttgacgatgt 252  Q
     ||||| || |||||    
T  16314082 cgtggtggatgatgt 16314096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 18488376 - 18488489
Alignment:
Q  138 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    ||||||||| ||| |||||||||   ||||||||  ||| ||||||| ||||| ||||| | || | |||||||| ||||||||||| ||||||||||||    
T  18488376 gccagtgttagaatttgtttcccctgttgcgcacattgatgtgcattttgagaaagtggaa-caattgcatctgacatcgcgggaggtgttggagaaccc 18488474  T
Q  238 tgtggttgacgatgt 252  Q
     ||||| || |||||    
T  18488475 cgtggtggatgatgt 18488489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 18492586 - 18492699
Alignment:
Q  138 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    ||||||||| ||| |||||||||   ||||||||  ||| ||||||| ||||| ||||| | || | |||||||| ||||||||||| ||||||||||||    
T  18492586 gccagtgttagaatttgtttcccctgttgcgcacattgatgtgcattttgagaaagtggaa-caattgcatctgacatcgcgggaggtgttggagaaccc 18492684  T
Q  238 tgtggttgacgatgt 252  Q
     ||||| || |||||    
T  18492685 cgtggtggatgatgt 18492699  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 252
Target Start/End: Original strand, 18494977 - 18495090
Alignment:
Q  138 gccagtgtttgaaattgtttcccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccc 237  Q
    ||||||||| ||| |||||||||   ||||||||| ||| ||||||| ||||| ||||| | || | |||||||| ||| ||||||| ||||||||||||    
T  18494977 gccagtgttagaatttgtttcccctattgcgcacgttgatgtgcattttgagaaagtggaa-caattgcatctgacatcacgggaggtgttggagaaccc 18495075  T
Q  238 tgtggttgacgatgt 252  Q
     ||||| || |||||    
T  18495076 cgtggtggatgatgt 18495090  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 252
Target Start/End: Complemental strand, 33041666 - 33041474
Alignment:
Q  59 cattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttc 158  Q
    ||||||||||||   |||||||||||||| |||| || |||||||| |  ||||||  |||  || ||||||   ||| |||||||||  || ||| |||    
T  33041666 cattgtcgtcaaactctttcagctttccattacacaatgtgtttgatagaatttctcctgaggagttgccacatactatgccagtgttataatttgcttc 33041567  T
Q  159 ccagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatctgatatcgcgggaggagttggagaaccctgtggttgacgatgt 252  Q
    |    ||| ||||| ||| ||| |||||||||||| || || ||| |||| ||| ||||||||||| |||||||||||||||||| || |||||    
T  33041566 ctctgttgtgcacgttgacgtgtattctgagagaggggaat-agttgcatatgacatcgcgggaggtgttggagaaccctgtggtggatgatgt 33041474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 29820419 - 29820551
Alignment:
Q  61 ttgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctagtgaaaagctgccactcgctacgccagtgtttgaaattgtttccc 160  Q
    ||||||||||   |||||||||||||| |||| || |||||||| |  ||||||  |||  || ||||||   ||| ||||||||| ||| |||||||||    
T  29820419 ttgtcgtcaaactctttcagctttccattacacaatgtgtttgatagaatttctcctgaggagttgccacatactatgccagtgttagaatttgtttccc 29820518  T
Q  161 agtttgcgcacgatgaagtgcattctgagagag 193  Q
       ||||||||| |||  |||||||||||||||    
T  29820519 ttattgcgcacgttgacatgcattctgagagag 29820551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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