View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209_low_7 (Length: 397)
Name: NF5209_low_7
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 41 - 381
Target Start/End: Original strand, 9411866 - 9412192
Alignment:
| Q |
41 |
aaaactcataagccaaaatccagtatctatatctatctcagtaccctacaccctagaaccatatccattaccatttgttccattcaatacttgcaacttg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
9411866 |
aaaactcataagccaaaatccagtatctatatctatctcagtatcctacaccctagaaccatatccattaccatttgttccattcattccttgcaacttg |
9411965 |
T |
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| Q |
141 |
ttctctgatttcttcctcttgatcacaatgtcaatgatccatgtgtaagcttccaaaagtacagcaattaatgccacccaatgctgcaataatgccggtg |
240 |
Q |
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| T |
9411966 |
ttctctgatttcttcctcttgatcacaatg------atccatgtgtaagcttccaaaagtacagcaaca----ccacccaatgctgcgataatgccggtg |
9412055 |
T |
|
| Q |
241 |
tatgcatgcttccagttatcgtagcgatctgctgcagacacctccaatgcctcgatcaaaccctttaaagatgttgatgacgctgatgattatagttgcg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||| |
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| T |
9412056 |
tatgcatgcttccagttatcgtagcgatctgctgcagacacctccaatgc----ttcaaatcctttaaagatgttgatgatgctgatgatgatagttgcg |
9412151 |
T |
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| Q |
341 |
tatccgacaccccaatggtaaaggttccagtagaatctgat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
9412152 |
tatccgacaccccaatggtaaaggttccagtagaatctgat |
9412192 |
T |
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