View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5209_low_8 (Length: 321)
Name: NF5209_low_8
Description: NF5209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5209_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 307
Target Start/End: Complemental strand, 40236750 - 40236458
Alignment:
| Q |
4 |
atcaggcctttcctttccaactgaaccaaagataagaaatttttcttacccacccatttccaatagaacttaattactcatggtcgctaatttcttgctt |
103 |
Q |
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| T |
40236750 |
atcaggcctttcctttccaactgaaccaaagatgagaaatttttcttacccacccacttccaatagaacttaattactcatggtcgctaatttcttgctt |
40236651 |
T |
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| Q |
104 |
ctttgtttgttggtacatagcatgtagtattactatttactattaccactcattgtagctttacgttcaaaatactgacgtggcatattctaaaatctaa |
203 |
Q |
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| T |
40236650 |
ctttatt----ggtacatagcatgtagtattactatt-------accactcattgtagctttacgttcaaaatactgacgtggcatattctaaaatctaa |
40236562 |
T |
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| Q |
204 |
atgtgtaggagtgagtttgtgatctcactatgaaatgtgatatgttgttgactatcaatgctcatcaatatttctactctaacagaccccttagcatcaa |
303 |
Q |
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| T |
40236561 |
atgtgtaggagtgagtttgtgatctcactatgaaatgtgatatgttgttgactatcaatgctcatcaatatttctactctaacagaccccttagcatcaa |
40236462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 40231215 - 40231134
Alignment:
| Q |
4 |
atcaggcctttcctttccaactgaaccaaagataagaaatttttcttacccacccatttccaatagaacttaattactcatg |
85 |
Q |
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||||||| ||||||||||||||| ||||||||| |||||||||||| |||||| || |||||| | |||||||||||||||| |
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| T |
40231215 |
atcaggcttttcctttccaactgcaccaaagatgagaaatttttctaacccactcacttccaaaataacttaattactcatg |
40231134 |
T |
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