View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5210-Insertion-2 (Length: 594)
Name: NF5210-Insertion-2
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5210-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 27 - 238
Target Start/End: Original strand, 39152661 - 39152870
Alignment:
| Q |
27 |
ctttccgctactagctaatcttgtatatattgcatttttgtgattgatttgtagttataaaacctgaagaagtattatcttaaaagttgggagtcaggtt |
126 |
Q |
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| T |
39152661 |
ctttctgctactagctaatcttgtatatattgcatttttgtgattgatttgtagttataaaacctgaagaagtattatcttaaaagttgggagtcaggtt |
39152760 |
T |
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| Q |
127 |
caaaaggtaatcacatcaaattgtagcttaagtccataatatccatcttttggataaatgtcttgaaaatgttctagaagcagttgatcatatatggcat |
226 |
Q |
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| T |
39152761 |
caaaaggtaatcacaacaaattgtagcttaagtccataatatccatcttttggataaatgtcttgaaaatgttctagaagcagttgatc--atatggtat |
39152858 |
T |
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| Q |
227 |
ttttatgtggca |
238 |
Q |
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|||||||||||| |
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| T |
39152859 |
ttttatgtggca |
39152870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 415 - 592
Target Start/End: Original strand, 39153860 - 39154037
Alignment:
| Q |
415 |
tattcactacctcactacaacgttttacattactataaaatgccctatggagagcaatttatataatttttcccctatctactttttagacattactgat |
514 |
Q |
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| T |
39153860 |
tattcactaccacactacaacgttttacattactatgaaatgccctatggagagcaatttatataatttttctcctatctactttttagacattactgat |
39153959 |
T |
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| Q |
515 |
gtgggactactcactcgtactctattattcaattcaacgattcnnnnnnnncctaaatttcttctaccaaccaaacca |
592 |
Q |
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| T |
39153960 |
gtgggactactcactcgtactctattattcaattcaacgattcaaaaaaaacctaaatttcttctaccgaccagacca |
39154037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 249 - 418
Target Start/End: Original strand, 39153649 - 39153820
Alignment:
| Q |
249 |
ttttagaaagatgaaataatcactaaaataaacatttcttcaaattcatcaactcnnnnnnnn-ttaaatgaacttataagaacttattaatgcatcttt |
347 |
Q |
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| T |
39153649 |
ttttagaaagatgaaataatcactaaaataaacatttcttcaaattcatcaactcaaaaaaaaattaaataaacttataagaatttattaatgcgtcttt |
39153748 |
T |
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| Q |
348 |
tcattcatttaataatattttgccgattnnnnnnnnnnnn-cttataagaattgtttactttaataattatt |
418 |
Q |
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| T |
39153749 |
tcattcatttaataatattttgccgattaaaaaaaaaagaacttataagaattgtttactttaataattatt |
39153820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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