View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5210_high_2 (Length: 478)
Name: NF5210_high_2
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5210_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39492875 - 39492660
Alignment:
| Q |
1 |
ctttgccagcatagaaaacgagtgctttctttataccaagtgccttaggctttccaatcggcttatcagctccggtcgccttccaatatccggttcccgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39492875 |
ctttgccagcatagaaaacgagtgctttctttataccaagtgccttaggctttccaatcggcttatcagctccggtcgccttccaatatccggttcccgc |
39492776 |
T |
|
| Q |
101 |
agcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccactctttctcaccgtaaagagccatttctgtatataaaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39492775 |
agcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccactctttctcaccgtaaagagccatttctgtatacaaaaca |
39492676 |
T |
|
| Q |
201 |
aaattagcattcaaat |
216 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
39492675 |
aaattagcattgaaat |
39492660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 257 - 452
Target Start/End: Complemental strand, 39492637 - 39492442
Alignment:
| Q |
257 |
ccaccagacacgatgaaaaagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcaca |
356 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39492637 |
ccactagacacgatgaaaaagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcaca |
39492538 |
T |
|
| Q |
357 |
ctttctacacaagtagtgattcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattcgcgtcgtata |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39492537 |
ctttctacacaagtagtgattcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattcgcgtcgtata |
39492442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 275 - 442
Target Start/End: Complemental strand, 44370976 - 44370809
Alignment:
| Q |
275 |
aagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcacactttctacacaagtagtg |
374 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||| | | |||||| || | |||||||||||| |
|
|
| T |
44370976 |
aagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattgaccagcacatttgcgacacaagtagtg |
44370877 |
T |
|
| Q |
375 |
attcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattc |
442 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
44370876 |
attcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattc |
44370809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 44371196 - 44371081
Alignment:
| Q |
54 |
ccaatcggcttatcagctccggtcgccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaa |
153 |
Q |
| |
|
||||| || ||||||||||| || || |||||||| || |||| ||||| || || |||| |||||||| ||||| |||| |||||||||||||||| |
|
|
| T |
44371196 |
ccaattggtttatcagctccagtagctttccaataaccacttccagcagctcgatttggcctcgaaccgttcggatactttctgtcccttggagagaaaa |
44371097 |
T |
|
| Q |
154 |
aataccactctttctc |
169 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
44371096 |
aataccattctttctc |
44371081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 39954405 - 39954320
Alignment:
| Q |
78 |
gccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccactc |
163 |
Q |
| |
|
|||||||||||||| | || || ||||||||||||| |||||||||||| ||||||| || | ||| |||||||| |||||||| |
|
|
| T |
39954405 |
gccttccaatatccagacccagccgcccggttcggccttgaaccgtttgggtattttctgtctcgtggcgagaaaaagtaccactc |
39954320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University