View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5210_high_3 (Length: 432)
Name: NF5210_high_3
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5210_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Complemental strand, 4207350 - 4206956
Alignment:
| Q |
14 |
aaatactataattcatttattttatcttgacataagacatgccaagaaaataagttacacgatacaaaaatgaaggcaaacggtcataaaaagctaaaca |
113 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
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| T |
4207350 |
aaatattataattcatttattttatcttgacataagacatgccaagaaaataagttacacgatacaaaagtgaaggcaaacgatcataaaaagttaaaca |
4207251 |
T |
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| Q |
114 |
agaactaaagagaatgcatagccaacaacaaatacaataaggaagtttaaatcccaaaccatccactacaattcaaaaatgcttaatatcgcgcaacagt |
213 |
Q |
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||||||||||| |||||||| |||||||||||||| | |||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4207250 |
agaactaaagacaatgcataaccaacaacaaatacgagaaggaaattcaaatcccaaaccgtccactacaattcaaaaatgcttaatatcgcgcaacagt |
4207151 |
T |
|
| Q |
214 |
acattacgactatttcacaaaattacattactttcacttgtattgtttaattaatttagcttctctcttaaatgatcattttggtatccaaagttaactc |
313 |
Q |
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|||| ||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4207150 |
acatcacgacta-ttcacgaaattacattgctttcacttgtattatttaattaatttagcttctctcttaaatgatcattttggtatccaaagttaactc |
4207052 |
T |
|
| Q |
314 |
tcagcttaattccatgtgaccatgaccacttcaactcatagataatttacgattctcccaaattgaattttcactcagatcctcaatcaaaagttca |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4207051 |
tcagcttaattccatgtgaccatgaccacttcaactcatagataatttacgattctcccaaattgaattttcactcagatcct-aatcaaaagttca |
4206956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 190 - 349
Target Start/End: Original strand, 33417972 - 33418131
Alignment:
| Q |
190 |
aaatgcttaatatcgcgcaacagtacattacgactatttcacaaaattacattactttcacttgtattgtttaattaatttagcttctctcttaaatgat |
289 |
Q |
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||||||||||||| || || |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
33417972 |
aaatgcttaatattgcaaaattgtacatcacgactatttcacaaaattacattgcttcgacttgtattgtttaattaatttaatttctttcttagatgat |
33418071 |
T |
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| Q |
290 |
cattttggtatccaaagttaactctcagcttaattccatgtgaccatgaccacttcaact |
349 |
Q |
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| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
33418072 |
gagtttggtatccaaagttaactctcagcttaattccatgagaccacgaccacttcaact |
33418131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 249 - 351
Target Start/End: Original strand, 38881352 - 38881454
Alignment:
| Q |
249 |
acttgtattgtttaattaatttagcttctctcttaaatgatcattttggtatccaaagttaactctcagcttaattccatgtgaccatgaccacttcaac |
348 |
Q |
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| T |
38881352 |
acttgtattgcttaattaatttagtttctctcttaaatgatgagtttggtatctaaagttaactcttagcttaattccatgtgaccacgaccactttaac |
38881451 |
T |
|
| Q |
349 |
tca |
351 |
Q |
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||| |
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| T |
38881452 |
tca |
38881454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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