View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5210_high_8 (Length: 240)
Name: NF5210_high_8
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5210_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 39493027 - 39493247
Alignment:
| Q |
2 |
ctcacagttacaattaatttaattgcagctcgatgattgggtgttgtgtcgaatttacaacaagaaagggaagattgagaaatacaatgacacaaaacca |
101 |
Q |
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| T |
39493027 |
ctcacagttacaattaatttaattgcagctcgatgattgggtgttgtgtcgaatttacaacaagaaagggaagattgagaaatacaatgacacaaaacca |
39493126 |
T |
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| Q |
102 |
ccaatgttttctcaatttgagaatgagacaaagcctcagatcaagattaacatcaacggccaggatgatcaattgtacactgacacatcagattcggtgc |
201 |
Q |
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| T |
39493127 |
ccaatgttttctcaatttgagaatgagacaaagcctcatatcaagatgaacatgaacggccaggatgatcaattgtacactgacacatcagattcggtgc |
39493226 |
T |
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| Q |
202 |
cactgtttcataccgactcaa |
222 |
Q |
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| T |
39493227 |
cactgtttcataccgactcaa |
39493247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 44371444 - 44371509
Alignment:
| Q |
24 |
ttgcagctcgatgattgggtgttgtgtcgaatttacaacaagaaagggaagattgagaaatacaat |
89 |
Q |
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| T |
44371444 |
ttgcagcttgatgattgggtgttgtgtagaatttacaacaagaaaggcaagattgagaaattcaat |
44371509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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