View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5210_high_9 (Length: 208)
Name: NF5210_high_9
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5210_high_9 |
 | |
|
| [»] scaffold0088 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0088 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 46620 - 46827
Alignment:
| Q |
1 |
caattcttttaatttatatctctcgtatcattaataaaaaatatttttgtaaagtgattgatatctaannnnnnnacccatgcaacactgttattatatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
46620 |
caattcttttaatttatatttctcgtatcattaataaaaaatatttttgtaaagtgattgatatctaatttttttatccatgcaacactgttattatatt |
46719 |
T |
|
| Q |
101 |
tctgaatgtgttattgccaaaatgttatagtagaacattcttaataaatggatatgatatttactcattataaacactttatgttattggtgatttgcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46720 |
tctgaatgtgttattgccaaaatgttatagtagaacattcttaataaatggatatgatatttactcattataaacactttacgttattggtgatttgcat |
46819 |
T |
|
| Q |
201 |
taacttta |
208 |
Q |
| |
|
||| |||| |
|
|
| T |
46820 |
taatttta |
46827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 37336858 - 37336801
Alignment:
| Q |
1 |
caattcttttaatttatatctctcgtatcattaataaaaaatat-ttttgtaaagtga |
57 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
37336858 |
caattcttttaatttatattttctttatcattaataaaaaatattttttgtaaagtga |
37336801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 2533094 - 2533155
Alignment:
| Q |
2 |
aattcttttaatttatatctctcgtatcattaataaaaaatatttttgtaaagtgattgata |
63 |
Q |
| |
|
|||||||||||||||| | | || |||||||||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
2533094 |
aattcttttaatttatgtttttcatatcattaatgaaatatattttggtaaaatgattgata |
2533155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 9553940 - 9553993
Alignment:
| Q |
2 |
aattcttttaatttatatctctcgtatcattaataaaaaatatttttgtaaagt |
55 |
Q |
| |
|
||||||||||| |||||| |||| || ||| |||||| |||||||||||||||| |
|
|
| T |
9553940 |
aattcttttaaattatatttctcataccatcaataaagaatatttttgtaaagt |
9553993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50755202 - 50755150
Alignment:
| Q |
1 |
caattcttttaatttatatctctcgtatcattaataaaaaatatttttgtaaa |
53 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
50755202 |
caatacttttaatttattcttctcatatcattaatgaaaaatatttttgtaaa |
50755150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37288431 - 37288379
Alignment:
| Q |
1 |
caattcttttaatttatatctctcgtatcattaataaaaaatatttttgtaaa |
53 |
Q |
| |
|
||||| ||||||||||||| | || || |||||||||||||||||||||||| |
|
|
| T |
37288431 |
caattattttaatttatatttttcatacaattaataaaaaatatttttgtaaa |
37288379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University