View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5210_low_11 (Length: 201)
Name: NF5210_low_11
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5210_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 1886344 - 1886143
Alignment:
| Q |
1 |
aacttgtttagtcagtataatttaacaagtgagaacatgcaatttgtttcattacgtacaatttgaccatatagaataaagagatagtataaattgattc |
100 |
Q |
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| T |
1886344 |
aacttgtttagtcagtataatttaacaagtgagaacatgcaatttgtttcattaggtacaatttgaccatatacaataaagagataggataaagtgattc |
1886245 |
T |
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| Q |
101 |
aaggattacaaaataagaactgatgc-aaagtgtactattttattacaggaagataataattttgtcttctagagttaagatcattggcttagaatggca |
199 |
Q |
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| T |
1886244 |
aaggattacaaaataagaactgatgctaaagtgtactattttattaaaggaagataataattttgtcttctagagttaagatcattggcttagaatgaca |
1886145 |
T |
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| Q |
200 |
ct |
201 |
Q |
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|| |
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| T |
1886144 |
ct |
1886143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 1876632 - 1876452
Alignment:
| Q |
34 |
aacatgcaatttgtttcattacgtacaatttgaccatatagaataaagagata-------------gtataaattgattcaaggattacaaaataagaac |
120 |
Q |
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| T |
1876632 |
aacatgcaatttgtttcattaagtacaagttgaccatatacgataaagagatattatgagatagtagtataaagtgattcaaggattacaaaataagaac |
1876533 |
T |
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| Q |
121 |
tgatgcaaagtgtactattttattacaggaagataataattttgtcttctagagttaagatcattggcttagaatggcact |
201 |
Q |
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| T |
1876532 |
tgatgcaaagtgtactattttattaaaggaagataataattttgtcttctagagttaagatcattggcttagaatgacact |
1876452 |
T |
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