View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5210_low_6 (Length: 261)

Name: NF5210_low_6
Description: NF5210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5210_low_6
NF5210_low_6
[»] chr7 (17 HSPs)
chr7 (1-261)||(1885596-1885856)
chr7 (96-261)||(1875267-1875432)
chr7 (4-53)||(24339668-24339717)
chr7 (1-37)||(25956468-25956504)
chr7 (6-53)||(11272570-11272617)
chr7 (1-37)||(5937421-5937457)
chr7 (4-47)||(7438732-7438775)
chr7 (1-36)||(36013799-36013834)
chr7 (1-40)||(48964059-48964098)
chr7 (4-46)||(18039025-18039067)
chr7 (1-35)||(22801743-22801777)
chr7 (1-47)||(44172880-44172926)
chr7 (4-36)||(17257990-17258022)
chr7 (4-52)||(26033446-26033494)
chr7 (4-40)||(27945067-27945103)
chr7 (1-53)||(35238168-35238220)
chr7 (8-52)||(41811668-41811712)
[»] scaffold0314 (1 HSPs)
scaffold0314 (1-87)||(8971-9060)
[»] chr6 (23 HSPs)
chr6 (1-48)||(785444-785491)
chr6 (1-40)||(19369840-19369879)
chr6 (4-53)||(16766723-16766772)
chr6 (4-61)||(21395284-21395341)
chr6 (3-79)||(1334686-1334767)
chr6 (1-37)||(6751882-6751918)
chr6 (8-53)||(9107354-9107399)
chr6 (5-53)||(10294134-10294182)
chr6 (1-37)||(26402680-26402716)
chr6 (7-63)||(28862151-28862207)
chr6 (10-53)||(22745989-22746032)
chr6 (1-43)||(602665-602707)
chr6 (4-50)||(9522917-9522963)
chr6 (13-51)||(10760828-10760866)
chr6 (44-86)||(32225336-32225378)
chr6 (4-53)||(5970092-5970141)
chr6 (4-53)||(8365503-8365552)
chr6 (4-53)||(8714006-8714055)
chr6 (4-40)||(9911525-9911561)
chr6 (1-29)||(10031593-10031621)
chr6 (1-33)||(10158007-10158039)
chr6 (4-40)||(10770671-10770707)
chr6 (1-37)||(28715318-28715354)
[»] chr5 (16 HSPs)
chr5 (1-52)||(30080486-30080537)
chr5 (4-53)||(21542056-21542105)
chr5 (1-53)||(21319929-21319981)
chr5 (4-53)||(21522776-21522825)
chr5 (4-53)||(21533342-21533391)
chr5 (4-53)||(39698567-39698616)
chr5 (1-36)||(19167577-19167612)
chr5 (1-40)||(32444789-32444828)
chr5 (2-36)||(16207592-16207626)
chr5 (4-37)||(8420053-8420086)
chr5 (4-53)||(18592099-18592148)
chr5 (4-53)||(21351889-21351938)
chr5 (1-54)||(29200782-29200835)
chr5 (8-53)||(37328828-37328873)
chr5 (4-61)||(30135340-30135399)
chr5 (4-40)||(31084349-31084385)
[»] chr1 (22 HSPs)
chr1 (1-55)||(14332431-14332485)
chr1 (1-47)||(24462260-24462306)
chr1 (9-79)||(40176634-40176704)
chr1 (4-53)||(47989523-47989572)
chr1 (1-47)||(28170404-28170450)
chr1 (4-53)||(6612155-6612204)
chr1 (42-79)||(18950995-18951032)
chr1 (4-53)||(31694694-31694743)
chr1 (4-48)||(6332696-6332740)
chr1 (1-40)||(26390130-26390169)
chr1 (4-50)||(34371739-34371785)
chr1 (4-50)||(48547972-48548018)
chr1 (4-53)||(5376484-5376533)
chr1 (4-53)||(6427490-6427539)
chr1 (1-46)||(32637858-32637903)
chr1 (4-37)||(38078661-38078694)
chr1 (1-54)||(43328490-43328543)
chr1 (4-53)||(44482256-44482305)
chr1 (5-37)||(7888122-7888154)
chr1 (4-40)||(24577183-24577219)
chr1 (1-37)||(31667448-31667484)
chr1 (1-37)||(50195465-50195501)
[»] scaffold0136 (1 HSPs)
scaffold0136 (4-53)||(3833-3882)
[»] chr8 (13 HSPs)
chr8 (4-53)||(22652002-22652051)
chr8 (4-47)||(25566867-25566910)
chr8 (4-53)||(15816113-15816162)
chr8 (4-53)||(29447094-29447143)
chr8 (3-63)||(3520016-3520075)
chr8 (1-40)||(5307083-5307122)
chr8 (1-36)||(31548294-31548329)
chr8 (1-31)||(31119110-31119140)
chr8 (1-35)||(42874545-42874579)
chr8 (4-53)||(2572040-2572089)
chr8 (4-61)||(13436941-13436997)
chr8 (4-53)||(28745524-28745573)
chr8 (1-37)||(10002163-10002199)
[»] chr4 (17 HSPs)
chr4 (1-53)||(5225597-5225649)
chr4 (1-53)||(37496727-37496779)
chr4 (1-52)||(22799878-22799929)
chr4 (4-53)||(847977-848026)
chr4 (1-37)||(13117452-13117488)
chr4 (1-37)||(13307900-13307936)
chr4 (1-40)||(11797625-11797664)
chr4 (1-39)||(30298970-30299008)
chr4 (1-39)||(30327838-30327876)
chr4 (1-30)||(10164861-10164890)
chr4 (4-53)||(24613685-24613734)
chr4 (4-45)||(28084548-28084589)
chr4 (4-40)||(12895113-12895149)
chr4 (1-37)||(21945526-21945562)
chr4 (1-53)||(35391242-35391294)
chr4 (43-79)||(39619055-39619091)
chr4 (1-49)||(47492402-47492450)
[»] chr2 (16 HSPs)
chr2 (1-53)||(24067276-24067328)
chr2 (1-37)||(43586005-43586041)
chr2 (4-53)||(11223847-11223896)
chr2 (1-42)||(14373422-14373463)
chr2 (4-51)||(15657890-15657937)
chr2 (7-54)||(35198214-35198261)
chr2 (1-31)||(13501084-13501114)
chr2 (4-54)||(18889574-18889624)
chr2 (4-37)||(5040760-5040793)
chr2 (4-46)||(14450784-14450828)
chr2 (4-53)||(36756328-36756377)
chr2 (8-53)||(37419773-37419818)
chr2 (4-37)||(37559003-37559036)
chr2 (1-45)||(6180857-6180901)
chr2 (1-53)||(40682005-40682057)
chr2 (5-53)||(44860347-44860395)
[»] scaffold0504 (1 HSPs)
scaffold0504 (1-79)||(8655-8733)
[»] chr3 (15 HSPs)
chr3 (4-53)||(14209139-14209188)
chr3 (4-53)||(28812541-28812590)
chr3 (2-38)||(49179714-49179750)
chr3 (6-53)||(14216920-14216967)
chr3 (6-53)||(14223049-14223096)
chr3 (1-36)||(14338484-14338519)
chr3 (6-53)||(15796278-15796325)
chr3 (1-40)||(44427864-44427903)
chr3 (4-53)||(4990951-4991000)
chr3 (4-37)||(10954978-10955011)
chr3 (4-53)||(14829715-14829764)
chr3 (1-53)||(15864268-15864320)
chr3 (5-53)||(29386495-29386543)
chr3 (4-52)||(34910343-34910391)
chr3 (4-40)||(49651783-49651819)
[»] scaffold0122 (1 HSPs)
scaffold0122 (43-87)||(10252-10296)
[»] scaffold0003 (1 HSPs)
scaffold0003 (4-53)||(241620-241669)
[»] scaffold0044 (1 HSPs)
scaffold0044 (4-52)||(53206-53254)
[»] scaffold0025 (1 HSPs)
scaffold0025 (4-40)||(23796-23832)
[»] scaffold0004 (1 HSPs)
scaffold0004 (1-53)||(83183-83235)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1885596 - 1885856
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacacacgttcaatcagaagtgtttgtgcaatgccgtcatcgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  1885596 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacacacgttcaatcagaagtgtctgagcaatgccgtcatcgga 1885695  T
Q  101 accacctgatgtcacgctcgaatgtcgtcacttaatcggcctctgtcggttactaccagaggtatcacaacaattcaatatctatatgtgttttaatcat 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1885696 accacctgatgtcacactcgaatgtcgtcacttaatcggcctctgtcggttactaccagaggtatcacaacaattcaatatctatatgtgttttaatcat 1885795  T
Q  201 aatgcaggggggagaggatatgtgcttgtttctaaagctgttagtaatgaaatcccttcac 261  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1885796 aatgcagggggcagaggatatgtgcttgtttctaaagctgttggtaatgaaatcccttcac 1885856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 96 - 261
Target Start/End: Original strand, 1875267 - 1875432
Alignment:
Q  96 tcggaaccacctgatgtcacgctcgaatgtcgtcacttaatcggcctctgtcggttactaccagaggtatcacaacaattcaatatctatatgtgtttta 195  Q
    |||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875267 tcggaaccacctgatgtcacactcgaatgtcgtcactaaatcggactttgtcggttactaccagaggtatcacaacaattcaatatctatatgtgtttta 1875366  T
Q  196 atcataatgcaggggggagaggatatgtgcttgtttctaaagctgttagtaatgaaatcccttcac 261  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1875367 ataataatgcagggggcagaggatatgtgcttgtttctaaagctgttagtaatgaaatcccttcac 1875432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 24339668 - 24339717
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  24339668 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacac 24339717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25956468 - 25956504
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  25956468 atgacataattcaatgtaatcacaagtgtcggtgtcg 25956504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 11272617 - 11272570
Alignment:
Q  6 ataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacac 11272570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5937457 - 5937421
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  5937457 atgacataattcaatgtaatcacaagtgtctgtgtcg 5937421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 7438732 - 7438775
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtc 47  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||    
T  7438732 acataattcaatgtaattacaagtgtcggtgtcatgtcggtgtc 7438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36013834 - 36013799
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  36013834 atgacataattcaatgtaatcacacgtgtcggtgtc 36013799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48964098 - 48964059
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  48964098 atgacataattcaatttaatcacaagtgttggtgtcgtgt 48964059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 18039025 - 18039067
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgt 46  Q
    |||||||||| |||||| ||||||||||||||||||| |||||    
T  18039025 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgt 18039067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 22801777 - 22801743
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgt 35  Q
    ||||||||||||| |||||||||||||||||||||    
T  22801777 atgacataattcactgtaatcacaagtgtcggtgt 22801743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44172926 - 44172880
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtc 47  Q
    |||||||||||||||||||||||| ||||  |||| |||||||||||    
T  44172926 atgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgtc 44172880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 17258022 - 17257990
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtc 36  Q
    ||||||||||||||||||| |||||||||||||    
T  17258022 acataattcaatgtaatcataagtgtcggtgtc 17257990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 26033494 - 26033446
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggaca 52  Q
    |||||||||| |||||| |||||||||||| |||||| |||||| ||||    
T  26033494 acataattcagtgtaattacaagtgtcggtctcgtgtcggtgtcagaca 26033446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 27945067 - 27945103
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| |||||| |||||||||||||||||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcgtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35238220 - 35238168
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||| |||||||| ||||  |||||||||  |||||||||||    
T  35238220 atgacataattcaatataatcacacgtgttagtgtcgtgtctgtgtcggacac 35238168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 41811668 - 41811712
Alignment:
Q  8 aattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggaca 52  Q
    ||||||||||||||| | ||||| |||||||||||||||| ||||    
T  41811668 aattcaatgtaatcatatgtgtcagtgtcgtgttggtgtcagaca 41811712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8971 - 9060
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttg---gtgtcggacaccaggacacacgttcaatcagaagtgtttgtgcaa 87  Q
    |||||||||||||| ||||||||||||||||||||| ||| |   |||||||||||| |||||| | ||||||||||||||| |||||||    
T  8971 atgacataattcaacgtaatcacaagtgtcggtgtcatgtcgtgtgtgtcggacaccgggacacgccttcaatcagaagtgtctgtgcaa 9060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 785491 - 785444
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcg 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  785491 atgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcg 785444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19369840 - 19369879
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19369840 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 19369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 16766723 - 16766772
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  16766723 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacac 16766772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 21395341 - 21395284
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacac 61  Q
    |||||||| | |||||| |||||||||||||||||||  |||||||||||||||||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcgtgtcagtgtcggacaccaggacac 21395284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 1334686 - 1334767
Alignment:
Q  3 gacataattcaatgtaatcacaagtgtcggtgtcg----tgttg-gtgtcggacaccaggacacacgttcaatcagaagtgt 79  Q
    ||||||||||||||||||||||| |||||||||||     | || |||||| |||||||||||||| |||||||||||||||    
T  1334686 gacataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgt 1334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6751918 - 6751882
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  6751918 atgacataattcaatgtaatcacaagtgtcggtgtcg 6751882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 9107399 - 9107354
Alignment:
Q  8 aattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||    
T  9107399 aattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacac 9107354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 10294134 - 10294182
Alignment:
Q  5 cataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||| ||||||||||| | | ||||||||||||||||||||||||||||    
T  10294134 catatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcggacac 10294182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26402716 - 26402680
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  26402716 atgacataattcagtgtaatcacaagtgtcggtgtcg 26402680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 28862151 - 28862207
Alignment:
Q  7 taattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacacac 63  Q
    ||||||| |||||||| | |||||||||||||||||||||| |||||  ||||||||    
T  28862151 taattcagtgtaatcatatgtgtcggtgtcgtgttggtgtctgacactgggacacac 28862207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 22745989 - 22746032
Alignment:
Q  10 ttcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||    
T  22745989 ttcaatgtaatcacaagtgtcggtgtcgtgtcgctgtcgaacac 22746032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 602665 - 602707
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttgg 43  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||    
T  602665 atgacataattcaatataatcacatgtgtcagtgtcgtgttgg 602707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 9522917 - 9522963
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcgga 50  Q
    |||||||||| |||||| |||||||||||||| |||| |||||||||    
T  9522917 acataattcagtgtaattacaagtgtcggtgttgtgtcggtgtcgga 9522963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 10760866 - 10760828
Alignment:
Q  13 aatgtaatcacaagtgtcggtgtcgtgttggtgtcggac 51  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  10760866 aatgtaatcacacgtgtcgatgtcgtgttggtgtcggac 10760828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 32225378 - 32225336
Alignment:
Q  44 tgtcggacaccaggacacacgttcaatcagaagtgtttgtgca 86  Q
    ||||||||||| |||||||| ||||||||| ||||||||||||    
T  32225378 tgtcggacacctggacacaccttcaatcaggagtgtttgtgca 32225336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 5970141 - 5970092
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| |||| ||| |||||||||| ||||||||||||    
T  5970141 acataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacac 5970092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 8365552 - 8365503
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||  |||||| ||||||||||||||||||| ||| ||||||||    
T  8365552 acataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacac 8365503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 8714006 - 8714055
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| |||| ||| |||||||||| ||||||||||||    
T  8714006 acataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtcggacac 8714055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 9911561 - 9911525
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| |||||| |||||||||||||||||||    
T  9911561 acataattcagtgtaattacaagtgtcggtgtcgtgt 9911525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10031593 - 10031621
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgt 29  Q
    |||||||||||||||||||||||||||||    
T  10031593 atgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10158007 - 10158039
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  10158007 atgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 10770707 - 10770671
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| |||||| |||||||||||||||||||    
T  10770707 acataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28715318 - 28715354
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  28715318 atgacataattcagtgtaattacaagtgtcggtgtcg 28715354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30080537 - 30080486
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggaca 52  Q
    ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  30080537 atgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggaca 30080486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 21542056 - 21542105
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacac 21542105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21319981 - 21319929
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||| |||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  21319981 atgatataattcaatgtaatcacaagtgtcgatgtcatgtcggtgtcggacac 21319929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 21522776 - 21522825
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  21522776 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacac 21522825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 21533342 - 21533391
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  21533342 acataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacac 21533391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 39698567 - 39698616
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||| ||||||||| ||||||||||||    
T  39698567 acataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacac 39698616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 19167612 - 19167577
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtc 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  19167612 atgacacaattcaatgtaatcacaagtgtcggtgtc 19167577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32444789 - 32444828
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  32444789 atgacataattcaatgtaatcaaatgtgtcggtgtcgtgt 32444828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 16207626 - 16207592
Alignment:
Q  2 tgacataattcaatgtaatcacaagtgtcggtgtc 36  Q
    |||||||||||||||||||||||||||| ||||||    
T  16207626 tgacataattcaatgtaatcacaagtgttggtgtc 16207592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 8420053 - 8420086
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||||||| ||||||||||||||||    
T  8420053 acataattcaatgtaattacaagtgtcggtgtcg 8420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 18592099 - 18592148
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||| | | ||| ||||||||||| ||||||||||||    
T  18592099 acataattcaatgtaattatatgtgccggtgtcgtgtcggtgtcggacac 18592148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 21351938 - 21351889
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||| ||| |||||| |||||    
T  21351938 acataattcagtgtaattacaagtgtcggtgtcatgtcggtgtccgacac 21351889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29200835 - 29200782
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacacc 54  Q
    ||||||||||| |||||||||||| |||| |||||||| ||||| || ||||||    
T  29200835 atgacataattgaatgtaatcacatgtgttggtgtcgttttggtatcagacacc 29200782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 37328873 - 37328828
Alignment:
Q  8 aattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||| |||||| ||| ||||||||||||||| ||||||||||||    
T  37328873 aattcagtgtaattacatgtgtcggtgtcgtgtcggtgtcggacac 37328828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 30135340 - 30135399
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt--tggtgtcggacaccaggacac 61  Q
    |||||| ||| |||||| ||||||||||||||| |||  |||||||||||| ||||||||    
T  30135340 acataactcattgtaattacaagtgtcggtgtcatgtcctggtgtcggacatcaggacac 30135399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 31084349 - 31084385
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  31084349 acataattcaatgtaattacaagtgtcgatgtcgtgt 31084385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14332431 - 14332485
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacacca 55  Q
    ||||||||||||||||||||||||  ||||||||| | |||||||||||||||||    
T  14332431 atgacataattcaatgtaatcacatatgtcggtgttgcgttggtgtcggacacca 14332485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24462306 - 24462260
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtc 47  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||    
T  24462306 atgacataattcaatgtaatcacaagtttcagtgtcgtgttggtgtc 24462260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 40176634 - 40176704
Alignment:
Q  9 attcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacacacgttcaatcagaagtgt 79  Q
    |||||||||||||||| ||||| ||||||||||||| ||| ||||| |||| ||| |||||||| ||||||    
T  40176634 attcaatgtaatcacatgtgtcagtgtcgtgttggtctcgaacaccgggacgcaccttcaatcacaagtgt 40176704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 47989523 - 47989572
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  47989523 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacac 47989572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 28170404 - 28170450
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtc 47  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  28170404 atgacataattcaatgtaataacaagtgtcagtgtcatgttggtgtc 28170450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 6612204 - 6612155
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||||||| | ||||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacac 6612155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 18950995 - 18951032
Alignment:
Q  42 ggtgtcggacaccaggacacacgttcaatcagaagtgt 79  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18950995 ggtgtcggacaccaggacacaccttcaatcagaagtgt 18951032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 31694743 - 31694694
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| | |||| ||||||||||||||||||| ||||||||||||    
T  31694743 acataattcagtataattacaagtgtcggtgtcgtgtcggtgtcggacac 31694694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 6332696 - 6332740
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcg 48  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||    
T  6332696 acataattcagtgtaattacaagtatcggtgtcgtgttggtgtcg 6332740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26390169 - 26390130
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  26390169 atgacataattgaatgtaatcacaagtgtcagtgtcgtgt 26390130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 34371739 - 34371785
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcgga 50  Q
    |||||||||| |||||| | | |||||||||||||||||||||||||    
T  34371739 acataattcagtgtaattatatgtgtcggtgtcgtgttggtgtcgga 34371785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 48548018 - 48547972
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcgga 50  Q
    ||||||||||||||||| |||||| | |||||||||| |||||||||    
T  48548018 acataattcaatgtaattacaagtattggtgtcgtgtcggtgtcgga 48547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 5376533 - 5376484
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| | ||||||||||||||||| | ||||||||||    
T  5376533 acataattcagtgtaattaaaagtgtcggtgtcgtgtcgatgtcggacac 5376484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 6427490 - 6427539
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||  ||||||||| ||||||||| || |||||||||    
T  6427490 acataattcaatgtaactacaagtgtcagtgtcgtgtaggcgtcggacac 6427539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32637858 - 32637903
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgt 46  Q
    ||||||||||| |||||||||||| |||||  ||||||||||||||    
T  32637858 atgacataattgaatgtaatcacatgtgtcaatgtcgtgttggtgt 32637903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 38078694 - 38078661
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||||||| ||||||||||||||||    
T  38078694 acataattcaatgtaattacaagtgtcggtgtcg 38078661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43328490 - 43328543
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacacc 54  Q
    |||| |||||| ||||||| |||| |||||  ||||||||||||||||||||||    
T  43328490 atgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgtcggacacc 43328543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 44482256 - 44482305
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| | | ||||||||||||||| ||||||||||||    
T  44482256 acataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacac 44482305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 7888122 - 7888154
Alignment:
Q  5 cataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||| |||||||||||||||||||||||||    
T  7888122 cataatttaatgtaatcacaagtgtcggtgtcg 7888154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 24577219 - 24577183
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| |||||| |||||||||||||||||||    
T  24577219 acataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31667448 - 31667484
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  31667448 atgacataattaaatgtaatcacatgtgtcggtgtcg 31667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50195501 - 50195465
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  50195501 atgacataattgaatgtaatcacatgtgtcggtgtcg 50195465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 3882 - 3833
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  3882 acataattcagtgtaattacaagtgtcagtgtcgtgttggtgtcggacac 3833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 22652002 - 22652051
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||||||    
T  22652002 acataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacac 22652051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 25566867 - 25566910
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtc 47  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  25566867 acataattcagtgtaattacaagtgtcggtgtcgtgttggtgtc 25566910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 15816162 - 15816113
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| | |||||| | ||||||||||||||||||||||||||||||    
T  15816162 acataatttagtgtaattataagtgtcggtgtcgtgttggtgtcggacac 15816113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 29447143 - 29447094
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||  ||||||||||||||| ||| ||||||||||||    
T  29447143 acataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacac 29447094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 3520075 - 3520016
Alignment:
Q  3 gacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacacac 63  Q
    |||| ||||||||||| ||||| ||||||||||| ||||||| ||||||||| ||||||||    
T  3520075 gacacaattcaatgtagtcacatgtgtcggtgtcatgttggtctcggacacc-ggacacac 3520016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5307083 - 5307122
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  5307083 atgacataattcaatgaaatcataagtgtcggtgtcgtgt 5307122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31548329 - 31548294
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  31548329 atgacataattcaatgtaatcacatgtgtcggtgtc 31548294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31119110 - 31119140
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcg 31  Q
    |||||||||||||||||||||||||||||||    
T  31119110 atgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 42874545 - 42874579
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgt 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  42874545 atgacataattcaatgtaatcacaagtgtcagtgt 42874579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 2572089 - 2572040
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| | |||||| |||||||||||||||||||  |||||||||||    
T  2572089 acataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacac 2572040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 13436997 - 13436941
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacac 61  Q
    ||||||||||  ||||| ||||||||||||||||||| |||||| |||||| ||||||    
T  13436997 acataattcatggtaataacaagtgtcggtgtcgtgtcggtgtc-gacaccgggacac 13436941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 28745524 - 28745573
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||  |||| ||||| |||||||| ||||||||||||    
T  28745524 acataattcaatgtaactacaaatgtcgatgtcgtgtcggtgtcggacac 28745573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10002199 - 10002163
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  10002199 atgacataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5225649 - 5225597
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||||||||| ||| | | ||||||||||||||||||||||||||||    
T  5225649 atgacataattcaatgcaataatatgtgtcggtgtcgtgttggtgtcggacac 5225597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37496727 - 37496779
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||||||||||||||||||||| |||| | || |||||||    
T  37496727 atgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacac 37496779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22799929 - 22799878
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggaca 52  Q
    |||||||||||||||||||||||| ||||| |||||||||  ||||||||||    
T  22799929 atgacataattcaatgtaatcacacgtgtcagtgtcgtgtcagtgtcggaca 22799878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 847977 - 848026
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| | |||| ||||||||||||||| ||||||||||||||||    
T  847977 acataattcactataattacaagtgtcggtgtcttgttggtgtcggacac 848026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13117452 - 13117488
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  13117452 atgacaaaattcaatgtaatcacaagtgtcggtgtcg 13117488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13307900 - 13307936
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  13307900 atgacataattcaatgtaatcacaagtgttggtgtcg 13307936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11797664 - 11797625
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  11797664 atgacataatttaatgtaatcacaagtgtcggtgttgtgt 11797625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30298970 - 30299008
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtg 39  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  30298970 atgacataattcagtgtaattacaagtgtcggtgtcgtg 30299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30327838 - 30327876
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtg 39  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  30327838 atgacataattcagtgtaattacaagtgtcggtgtcgtg 30327876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10164890 - 10164861
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  10164890 atgacataattcaatgtaatcacaagtgtc 10164861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 24613734 - 24613685
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||  ||||||||||||||| ||| |||||| |||||    
T  24613734 acataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacac 24613685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 28084548 - 28084589
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtg 45  Q
    ||||||||||||||||| ||||||||| ||||||||| ||||    
T  28084548 acataattcaatgtaattacaagtgtctgtgtcgtgtcggtg 28084589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 12895149 - 12895113
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  12895149 acataattcaaagtaattacaagtgtcggtgtcgtgt 12895113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21945526 - 21945562
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  21945526 atgacataattcagtgtaattacaagtgtcggtgtcg 21945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 35391294 - 35391242
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||| | ||||||||| || ||||| ||||||||||| ||||||||||    
T  35391294 atgacataactgaatgtaatctcatgtgtcagtgtcgtgttgatgtcggacac 35391242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 39619091 - 39619055
Alignment:
Q  43 gtgtcggacaccaggacacacgttcaatcagaagtgt 79  Q
    |||||||||||| |||||||| |||||||||||||||    
T  39619091 gtgtcggacaccgggacacaccttcaatcagaagtgt 39619055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47492402 - 47492450
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcgg 49  Q
    ||||||||||| |||||||||||||||||| |||| || ||| ||||||    
T  47492402 atgacataatttaatgtaatcacaagtgtcagtgttgtattgatgtcgg 47492450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24067276 - 24067328
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||||||||||||||| ||| || ||| ||||||||||||    
T  24067276 atgacataattcaatgtaatcacaagtgttggtttcatgtcggtgtcggacac 24067328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43586041 - 43586005
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  43586041 atgacataattcaatgtaatcacaagtgtcggtgtcg 43586005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 11223896 - 11223847
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||||||| ||| ||||||||||||    
T  11223896 acataattcagtgtaattacaagtgtcggtgtcatgtaggtgtcggacac 11223847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14373463 - 14373422
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttg 42  Q
    |||||||||||||||||||||||| |||||||||| ||||||    
T  14373463 atgacataattcaatgtaatcacatgtgtcggtgttgtgttg 14373422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 15657890 - 15657937
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggac 51  Q
    |||||||||| |||||| |||| |||||||||||||||| ||||||||    
T  15657890 acataattcagtgtaattacaaatgtcggtgtcgtgttgatgtcggac 15657937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 35198261 - 35198214
Alignment:
Q  7 taattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacacc 54  Q
    ||||| |||||||||||| ||| ||||||||||||| |||||||||||    
T  35198261 taattgaatgtaatcacatgtgacggtgtcgtgttgttgtcggacacc 35198214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 13501114 - 13501084
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcg 31  Q
    |||||||||||||||||||||||||||||||    
T  13501114 atgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 18889624 - 18889574
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacacc 54  Q
    |||||||||| |||||||| | ||||||||||| |||| ||||||||||||    
T  18889624 acataattcagtgtaatcatatgtgtcggtgtcttgtttgtgtcggacacc 18889574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 5040760 - 5040793
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||||||| ||||||||||||||||    
T  5040760 acataattcaatgtaattacaagtgtcggtgtcg 5040793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 14450828 - 14450784
Alignment:
Q  4 acataattcaatgtaatcacaagtgtc--ggtgtcgtgttggtgt 46  Q
    |||||||||||||||||||||||||||   |||||||||||||||    
T  14450828 acataattcaatgtaatcacaagtgtcagtgtgtcgtgttggtgt 14450784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 36756377 - 36756328
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| | |||||||||||||||||| |||||| ||||    
T  36756377 acataattcagtgtaattataagtgtcggtgtcgtgttagtgtcgaacac 36756328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 37419773 - 37419818
Alignment:
Q  8 aattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||| |||||| ||||||| ||||||||||| ||||||||||||    
T  37419773 aattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacac 37419818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 37559003 - 37559036
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    ||||||||||||||||| ||||||||||||||||    
T  37559003 acataattcaatgtaattacaagtgtcggtgtcg 37559036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6180901 - 6180857
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtg 45  Q
    ||||||| |||||||||||||| ||||| ||| ||||||||||||    
T  6180901 atgacatgattcaatgtaatcataagtgccggagtcgtgttggtg 6180857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40682005 - 40682057
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||||||||  || |||||  |||||||||||||| ||||||    
T  40682005 atgacataattcaatgtaattgcacgtgtcaatgtcgtgttggtgttggacac 40682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 44860347 - 44860395
Alignment:
Q  5 cataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||| |||||| | | ||||||||||||||||||||| ||||||    
T  44860347 cataattcagtgtaattatatgtgtcggtgtcgtgttggtgttggacac 44860395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 8733 - 8655
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacaccaggacacacgttcaatcagaagtgt 79  Q
    ||||||| ||||||||||| ||||||||| | ||||||||  ||||| |||||| |||||  | |||||||||||||||    
T  8733 atgacatgattcaatgtaaccacaagtgtggttgtcgtgtcagtgtcagacaccgggacatgccttcaatcagaagtgt 8655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 14209139 - 14209188
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||| ||||||||| ||||||||||||    
T  14209139 acataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacac 14209188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 28812541 - 28812590
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||| | |||||||||||||||||||||||||| |||||    
T  28812541 acataattcagtgtagttacaagtgtcggtgtcgtgttggtgtcagacac 28812590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 49179750 - 49179714
Alignment:
Q  2 tgacataattcaatgtaatcacaagtgtcggtgtcgt 38  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49179750 tgacataattcgatgtaatcacaagtgtcggtgtcgt 49179714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 14216920 - 14216967
Alignment:
Q  6 ataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| |||||| ||||||||| |||||||||| |||||||||||    
T  14216920 ataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacac 14216967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 14223049 - 14223096
Alignment:
Q  6 ataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| |||||| ||||||||| |||||||||| |||||||||||    
T  14223049 ataattcagtgtaattacaagtgtccgtgtcgtgttagtgtcggacac 14223096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14338519 - 14338484
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtc 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  14338519 atgacataattcaatgtaatcacaaatgtcggtgtc 14338484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 15796325 - 15796278
Alignment:
Q  6 ataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  15796325 ataattcagtgtaattacaattgtcggtgtcgtgtaggtgtcggacac 15796278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44427864 - 44427903
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  44427864 atgacataatccaatgtaatcacatgtgtcggtgtcgtgt 44427903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 4991000 - 4990951
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||||| |||||| ||||||||||| ||||||||||| || |||||    
T  4991000 acataattcagtgtaattacaagtgtcggcgtcgtgttggtatcagacac 4990951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 10954978 - 10955011
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcg 37  Q
    |||||||||| |||||||||||||||||||||||    
T  10954978 acataattcagtgtaatcacaagtgtcggtgtcg 10955011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 14829715 - 14829764
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||  ||||| ||||||||||||||||||| ||||| ||||||    
T  14829715 acataattcatggtaattacaagtgtcggtgtcgtgtcggtgttggacac 14829764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15864268 - 15864320
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||||| ||||||  ||||| |||||||||| | ||||||||||    
T  15864268 atgacataattcaatataatcattagtgttggtgtcgtgtcgctgtcggacac 15864320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 29386543 - 29386495
Alignment:
Q  5 cataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||| |||||||| | ||||||||||||||| ||| ||||||||    
T  29386543 cataattcagtgtaatcatatgtgtcggtgtcgtgtaggtatcggacac 29386495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 34910343 - 34910391
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggaca 52  Q
    |||||||||| |||||| ||||| ||||||||||| | |||||||||||    
T  34910343 acataattcagtgtaattacaagagtcggtgtcgtatcggtgtcggaca 34910391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 49651819 - 49651783
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| |||||| |||||||||||||||||||    
T  49651819 acataattcactgtaattacaagtgtcggtgtcgtgt 49651783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 10296 - 10252
Alignment:
Q  43 gtgtcggacaccaggacacacgttcaatcagaagtgtttgtgcaa 87  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||    
T  10296 gtgtcggacagcaggacacaccttcaatcagaagtgtctgtgcaa 10252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 241620 - 241669
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    |||||||| | |||||| |  |||||||||||||||||||||||||||||    
T  241620 acataatttagtgtaattatgagtgtcggtgtcgtgttggtgtcggacac 241669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 53206 - 53254
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggaca 52  Q
    |||||||||| |||||| | ||||||||||| ||||| |||||||||||    
T  53206 acataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggaca 53254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 23796 - 23832
Alignment:
Q  4 acataattcaatgtaatcacaagtgtcggtgtcgtgt 40  Q
    |||||||||| |||||| |||||||||||||||||||    
T  23796 acataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 83183 - 83235
Alignment:
Q  1 atgacataattcaatgtaatcacaagtgtcggtgtcgtgttggtgtcggacac 53  Q
    ||||||||||||| |||||| |||| |||||||||||| ||| | ||||||||    
T  83183 atgacataattcagtgtaattacaaatgtcggtgtcgtattgatatcggacac 83235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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