View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5211-Insertion-1 (Length: 1160)

Name: NF5211-Insertion-1
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5211-Insertion-1
NF5211-Insertion-1
[»] chr2 (4 HSPs)
chr2 (31-699)||(5331781-5332447)
chr2 (180-699)||(5314368-5314881)
chr2 (784-876)||(37037942-37038035)
chr2 (717-751)||(37038074-37038108)
[»] chr5 (4 HSPs)
chr5 (698-1045)||(33807872-33808214)
chr5 (698-1045)||(33811526-33811868)
chr5 (698-1045)||(33816444-33816786)
chr5 (782-876)||(22763905-22764002)
[»] chr6 (4 HSPs)
chr6 (699-998)||(31151926-31152226)
chr6 (699-895)||(22981504-22981710)
chr6 (699-895)||(23806698-23806904)
chr6 (775-919)||(1111378-1111524)
[»] chr3 (9 HSPs)
chr3 (699-1018)||(50603085-50603403)
chr3 (699-895)||(44782524-44782733)
chr3 (699-895)||(54967210-54967419)
chr3 (780-895)||(18556392-18556511)
chr3 (782-903)||(39298785-39298908)
chr3 (711-895)||(54979854-54980051)
chr3 (850-921)||(31725346-31725417)
chr3 (778-876)||(17645800-17645897)
chr3 (699-751)||(17645928-17645981)
[»] chr1 (1 HSPs)
chr1 (699-913)||(29706854-29707069)
[»] scaffold0045 (1 HSPs)
scaffold0045 (717-876)||(26516-26674)
[»] chr7 (11 HSPs)
chr7 (698-895)||(4842647-4842857)
chr7 (699-895)||(4835575-4835782)
chr7 (699-876)||(25857131-25857317)
chr7 (780-895)||(13465046-13465165)
chr7 (790-953)||(8252686-8252849)
chr7 (782-895)||(24379370-24379487)
chr7 (699-749)||(24380113-24380163)
chr7 (782-876)||(27341025-27341120)
chr7 (773-893)||(17845847-17845969)
chr7 (694-769)||(24379274-24379347)
chr7 (782-847)||(38994151-38994218)
[»] chr8 (3 HSPs)
chr8 (699-895)||(41481606-41481815)
chr8 (699-904)||(36167596-36167813)
chr8 (704-892)||(18951129-18951326)
[»] scaffold0479 (1 HSPs)
scaffold0479 (699-895)||(2727-2936)
[»] chr4 (3 HSPs)
chr4 (698-904)||(9757211-9757431)
chr4 (780-876)||(37286972-37287069)
chr4 (782-893)||(42682924-42683038)
[»] scaffold0003 (1 HSPs)
scaffold0003 (698-876)||(342216-342404)


Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 31 - 699
Target Start/End: Complemental strand, 5332447 - 5331781
Alignment:
Q  31 tttcatttaataatatgcttaagaaacgcacataattttttaatcatgtttgtgttatatattattccgtccacacatgaatacatgatacacatgcata 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||    
T  5332447 tttcatttaataatatgcttaagaaacgcacataattttttaatcatgtttgtgttatatattattccttccatacatgaatacatgatacacatacata 5332348  T
Q  131 actaatgagatatatacttcaattagttaatttgagaaacctagtgatgggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgac 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332347 actaatgagatatatacttcaattagttaatttgagaaacctagt--tgggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgac 5332250  T
Q  231 tggaaagggtttgtgaattttttcgatcacaataaaacgctattgaatagacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtg 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332249 tggaaagggtttgtgaattttttcgatcacaataaaacgctattgaatagacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtg 5332150  T
Q  331 gtagcccagatatgtataacaaaatgctatcaatggtgggtccatcaatgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatga 430  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332149 gtagcccagacatgtataacaaaatgctatcaatggtggatccatcaatgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatga 5332050  T
Q  431 agtggcattcacaggagaggttggaatgacaaagagtacattgatgaaagacatggaagcacaggcacagtcagagtttccattgcagcagccattacta 530  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5332049 agtggcattcacaggagaggttgaaatgacaaagagtacattgatgaaagacatggaagcacaggcacagtcagagtttccattgcagcagccattacta 5331950  T
Q  531 gaagtgagaaacaaacttggagaaaccccggtttatagggcagctgctcttggaaagacaaatttgatcaagtgttttcttgacgaattgagcgtggatt 630  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5331949 gaagtgagaaacaaacttggagaaaccccggtttataggacagctgctcttggaaagacaaatttgattaagtgttttcttgacgaattgagcgtggatt 5331850  T
Q  631 taagggttcattttcatagaactgttgataaaatgtctattcttgacattgctgtcattggccaattct 699  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5331849 taagggttcattttcatagaactgttgataaaatgtctattcttgacattgctgtcattggccaattct 5331781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 180 - 699
Target Start/End: Original strand, 5314368 - 5314881
Alignment:
Q  180 ggttcaattgaagaaatgaaagagccatatatattagcaaagaaatatgactggaaagggtttgtgaattttttcgatcacaataaaacgctattgaata 279  Q
    |||||||||||| |||||||||| ||||||||||||||||||| |||| | |||||||| ||| |  | ||||||  | |  | |||   |||||| |||    
T  5314368 ggttcaattgaaaaaatgaaagaaccatatatattagcaaagagatataattggaaaggatttttagaatttttccttaaacacaaagatctattggata 5314467  T
Q  280 gacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtggtagcccagatatgtataacaaaatgctatcaatggtgggtccatca-- 377  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| || ||||| |||||||      
T  5314468 aacaaatagacttgcatcaaagcactccttttcactatgcagcacattgtggtagcccagaaatgtacaacaaaatgctattaaaggtggatccatcaaa 5314567  T
Q  378 -atgcaacatgtgttgaggatgaaagatgacatgggaaacacaccacttcatgaagtggcattcacaggagaggttggaatgacaaagagtacattgatg 476  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |||| |||||||||||||| ||||| |    
T  5314568 catgcaacatgtgttgaggatgcaagatgacatgggaaacacaccacttcatgaagtggctttcacaggtgaagttgaaatgacaaagagtatattgaag 5314667  T
Q  477 aaagacatggaagcacaggcacagtcagagtttccattgcagcagccattactagaagtgagaaacaaacttggagaaaccccggtttatagggcagctg 576  Q
    |||||   |||| ||  | || ||    |||||||      |  ||||||  || |  |||||||||||||||||||||| || || |||||||| ||||    
T  5314668 aaagaagaggaaacaatgtcagag---cagtttcc------gaggccattgttacagttgagaaacaaacttggagaaactccagtgtatagggctgctg 5314758  T
Q  577 ctcttggaaagacaaatttgatcaagtgttttcttgacgaattgagcgtggatttaagggttcattttcatagaactgttgataaaatgtctattcttga 676  Q
    ||||||| ||||||| |||| | || || ||| |||| || ||| | ||||||||||||| |||||||||||| |||| |||||| ||||| |||||| |    
T  5314759 ctcttgggaagacaagtttggttaaatgctttgttgaagagttgggtgtggatttaagggatcattttcataggactggtgataagatgtccattcttca 5314858  T
Q  677 cattgctgtcattggccaattct 699  Q
    || |||||||||||  |||||||    
T  5314859 cactgctgtcattgatcaattct 5314881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 784 - 876
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
Q  784 ttttagcgtggaaaaccttctcaatgtgagtaagga-aaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 876  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||||| |  ||||||||||  | ||||||||  |||||| ||||||||    
T  37038035 ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa 37037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 717 - 751
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
Q  717 taatttccctcctccgtgaactcaaaataggcact 751  Q
    ||||||| |||||||||||||||||||||||||||    
T  37038108 taatttctctcctccgtgaactcaaaataggcact 37038074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 698 - 1045
Target Start/End: Complemental strand, 33808214 - 33807872
Alignment:
Q  698 ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 797  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33808214 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa 33808117  T
Q  798 accttctcaatgtgagtaaggaaaa-ccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 896  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33808116 accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33808017  T
Q  897 ctaactatgtatctcaatttgtagatacaactctcac-aattggctcactatattttttctctcacactcttatgagg-actcttctatttttcctctca 994  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  33808016 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata-tttttctctcacactcttatgaggaactc-tctattttt-ctctca 33807920  T
Q  995 actctattgtgagtgaggattgtgtttgtggtgtggtttcattgctgaaac 1045  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  33807919 actcta-tgtgagtgaggattgtg-ttgtggtgt-gtttcattgctgaaac 33807872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 698 - 1045
Target Start/End: Complemental strand, 33811868 - 33811526
Alignment:
Q  698 ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 797  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33811868 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa 33811771  T
Q  798 accttctcaatgtgagtaaggaaaa-ccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 896  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33811770 accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33811671  T
Q  897 ctaactatgtatctcaatttgtagatacaactctcac-aattggctcactatattttttctctcacactcttatgagg-actcttctatttttcctctca 994  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  33811670 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata-tttttctctcacactcttatgaggaactc-tctattttt-ctctca 33811574  T
Q  995 actctattgtgagtgaggattgtgtttgtggtgtggtttcattgctgaaac 1045  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  33811573 actcta-tgtgagtgaggattgtg-ttgtggtgt-gtttcattgctgaaac 33811526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 698 - 1045
Target Start/End: Complemental strand, 33816786 - 33816444
Alignment:
Q  698 ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaa 797  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  33816786 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaa 33816689  T
Q  798 accttctcaatgtgagtaaggaaaa-ccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 896  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33816688 accttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 33816589  T
Q  897 ctaactatgtatctcaatttgtagatacaactctcac-aattggctcactatattttttctctcacactcttatgagg-actcttctatttttcctctca 994  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| ||||||    
T  33816588 ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata-tttttctctcacactcttatgaggaactc-tctattttt-ctctca 33816492  T
Q  995 actctattgtgagtgaggattgtgtttgtggtgtggtttcattgctgaaac 1045  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  33816491 actcta-tgtgagtgaggattgtg-ttgtggtgt-gtttcattgctgaaac 33816444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 782 - 876
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
Q  782 aattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 876  Q
    ||||||||| ||||||||||||||||| |||| ||||  ||||||||||||||  |  |||||||||| | |   ||||||| |||||||||||||||    
T  22763905 aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa 22764002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 699 - 998
Target Start/End: Original strand, 31151926 - 31152226
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 798  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  31151926 tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa 31152025  T
Q  799 ccttctcaatgtgagtaag--gaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggac 896  Q
    |||||||||||||||||||   |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31152026 ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac 31152125  T
Q  897 ctaactatgtatctcaatttgtagatacaactctcac-aattggctcactatattttttctctcacactcttatgagg-actcttctatttttcctctca 994  Q
    ||||||| |||||| ||||| |||||||||||||||| |||||||| |||||| ||||||||||||||||||| |||| |||| ||||||||| ||||||    
T  31152126 ctaactacgtatctaaatttatagatacaactctcacaaattggcttactata-tttttctctcacactcttacgaggaactc-tctattttt-ctctca 31152222  T
Q  995 actc 998  Q
    ||||    
T  31152223 actc 31152226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 699 - 895
Target Start/End: Complemental strand, 22981710 - 22981504
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag 789  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| |||||||  |||||||||||  ||||| |        |||||  | ||||||||    
T  22981710 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag 22981614  T
Q  790 cgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 885  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||||    
T  22981613 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc 22981514  T
Q  886 ctcaggtgga 895  Q
    || |||||||    
T  22981513 cttaggtgga 22981504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 699 - 895
Target Start/End: Original strand, 23806698 - 23806904
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatgac-------acacaacaaaattttag 789  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||| |||||||  |||||||||||  ||||| |        |||||  | ||||||||    
T  23806698 tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcact--agcggaaacgtgaaaaataagcgtaatgacacag-agaattttag 23806794  T
Q  790 cgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 885  Q
    |||||||||||||||||||||||| ||||  ||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | |||||||    
T  23806795 cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttcacc 23806894  T
Q  886 ctcaggtgga 895  Q
    || |||||||    
T  23806895 cttaggtgga 23806904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 775 - 919
Target Start/End: Original strand, 1111378 - 1111524
Alignment:
Q  775 acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaac-cacgggacccgtaagcctcttaaatctccacta-taataataatgggaat 872  Q
    ||||||||||||||| || ||||||||||| ||||| | |||||||||  || ||||| | |||| ||||||||||| |  || ||||||||||| ||||    
T  1111378 acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat 1111477  T
Q  873 acaaatcttcaccctcaggtggacctaactatgtatctcaatttgta 919  Q
    |||||  |||||||| | ||  |||||||||||||||||||||||||    
T  1111478 acaaactttcacccttacgtaaacctaactatgtatctcaatttgta 1111524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 699 - 1018
Target Start/End: Complemental strand, 50603403 - 50603085
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 798  Q
    |||||||||||||| |   |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  50603403 tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa 50603304  T
Q  799 ccttctcaatgtgagtaaggaaaa-ccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 897  Q
    ||||||||||||||||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||    
T  50603303 ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc 50603204  T
Q  898 taactatgtatctcaatttgtagatacaactctca---caattggctcactatattttttctctcacactcttatgaggactcttctatttttcctctca 994  Q
    ||||||| |||||||||||||||||||||||||||    |||||||||||||||||||   |||| ||||||||||||||   |||||||||| ||||||    
T  50603203 taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttt---tctctcactcttatgaggaactttctattttt-ctctca 50603108  T
Q  995 actctattgtgagtgaggattgtg 1018  Q
    |||||  |||||||||||||||||    
T  50603107 actct-gtgtgagtgaggattgtg 50603085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 699 - 895
Target Start/End: Original strand, 44782524 - 44782733
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 787  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  44782524 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 44782620  T
Q  788 agcgtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 882  Q
    ||||||||||||||||||||| |||| ||||   ||||||||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  44782621 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaacttc 44782720  T
Q  883 accctcaggtgga 895  Q
    ||||| |||||||    
T  44782721 acccttaggtgga 44782733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 699 - 895
Target Start/End: Original strand, 54967210 - 54967419
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 787  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||||||| ||||           |||||| || | ||||||    
T  54967210 tgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaatttt 54967306  T
Q  788 agcgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttc 882  Q
    ||||||||||||||||||||| |||| ||||  ||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||    
T  54967307 agcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttc 54967406  T
Q  883 accctcaggtgga 895  Q
    ||||| |||||||    
T  54967407 acccttaggtgga 54967419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 780 - 895
Target Start/End: Original strand, 18556392 - 18556511
Alignment:
Q  780 aaaattttagcgtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 876  Q
    ||||||||||||||||||||||||||||| |||| ||||   |||||||||||||||   |||||||||||  ||||||||||| | |||| ||||||||    
T  18556392 aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa 18556491  T
Q  877 -atcttcaccctcaggtgga 895  Q
     | ||||||||| |||||||    
T  18556492 caacttcacccttaggtgga 18556511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 782 - 903
Target Start/End: Complemental strand, 39298908 - 39298785
Alignment:
Q  782 aattttagcgtggaaaaccttctcaatgtgagtaaggaaaac-cacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc 879  Q
    |||||||| ||| ||||||||||||||||||  ||||||||  |||||||||| |  ||||||||||  ||||||||||| |||| |||||||||| | |    
T  39298908 aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac 39298809  T
Q  880 ttcaccctcaggtggacctaacta 903  Q
    |||||||| ||||||| |||||||    
T  39298808 ttcacccttaggtggatctaacta 39298785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 711 - 895
Target Start/End: Original strand, 54979854 - 54980051
Alignment:
Q  711 cctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattttagcgtggaaaac 799  Q
    ||||| ||||||||||||||||| ||||||||||| |||||  ||||||||||| ||||           |||||| || | ||||||||| ||||||||    
T  54979854 cctgcataatttccctcctccgtcaactcaaaataagcact--agcggaaacgtgaaataaaagtgtaatgacaca-aagagaattttagcatggaaaac 54979950  T
Q  800 cttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atcttcaccctcaggtgg 894  Q
    ||||||||| |||| ||||  ||||||||||||||| |  |||||||  |||  ||||||||||| ||||||||||||||| | ||||||||| ||||||    
T  54979951 cttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaacttcacccttaggtgg 54980050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 850 - 921
Target Start/End: Original strand, 31725346 - 31725417
Alignment:
Q  850 tccactataataataatgggaatacaaatcttcaccctcaggtggacctaactatgtatctcaatttgtaga 921  Q
    |||| ||||| ||||||| |||||||||||||||| || |||||||||| || |||||||||||||||||||    
T  31725346 tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtaga 31725417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 778 - 876
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
Q  778 acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 876  Q
    ||||||||||||||||||||||||||||||| | |  ||  ||||||||||||| | | ||| |||||||  ||||||||||| ||||||  |||||||    
T  17645897 acaaaattttagcgtggaaaaccttctcaatat-aaaaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa 17645800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 699 - 751
Target Start/End: Complemental strand, 17645981 - 17645928
Alignment:
Q  699 tgttgggaaatg-cctgcttaatttccctcctccgtgaactcaaaataggcact 751  Q
    |||||||||||| ||| | ||||||||||| |||||||||||||||||| ||||    
T  17645981 tgttgggaaatgacctccataatttccctcatccgtgaactcaaaatagacact 17645928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 699 - 913
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa 798  Q
    |||||| |||||||| | ||||||| ||| |||||||||| |||||| ||||||||||  ||| ||||||||||||||||||||||||||| | ||||||    
T  29706854 tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa 29706953  T
Q  799 ccttctcaatgtgagtaaggaa-aaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc 897  Q
    |||||||||| ||||||||||| || |||||||| | ||  |||||||||||||||||||||||||||||| |  | |||||||||||||| ||||||||    
T  29706954 ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc 29707053  T
Q  898 taactatgtatctcaa 913  Q
    ||||||||||||||||    
T  29707054 taactatgtatctcaa 29707069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 717 - 876
Target Start/End: Original strand, 26516 - 26674
Alignment:
Q  717 taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa 816  Q
    |||| |||||||| |||||||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||| |||||||||||| |||||||||||||    
T  26516 taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa 26613  T
Q  817 gg-aaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 876  Q
    || ||||| ||||||||| |  ||||||||||  |||||| |||| |||| | ||||||||    
T  26614 ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaa 26674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 698 - 895
Target Start/End: Original strand, 4842647 - 4842857
Alignment:
Q  698 ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt 786  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | |||||    
T  4842647 ctgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaattt 4842743  T
Q  787 tagcgtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt 881  Q
    ||||||||||||||||||||||||||| ||||   |||||||| |||||| |  |||||||||| | ||||||||||| ||||| ||||||||| | |||    
T  4842744 tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaacaactt 4842843  T
Q  882 caccctcaggtgga 895  Q
    |||||| |||||||    
T  4842844 cacccttaggtgga 4842857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 699 - 895
Target Start/End: Original strand, 4835575 - 4835782
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc 790  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||  || |||||||| ||||  | ||      ||| | | |||||||||    
T  4835575 tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc 4835672  T
Q  791 gtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc 885  Q
    ||||||||||||||||||||||| ||||   ||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||| ||| | |||||||    
T  4835673 gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc 4835772  T
Q  886 ctcaggtgga 895  Q
    || |||||||    
T  4835773 cttaggtgga 4835782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 699 - 876
Target Start/End: Original strand, 25857131 - 25857317
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 787  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||| ||||           |||||| |    ||||||    
T  25857131 tgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aatttt 25857225  T
Q  788 agcgtggaaaaccttctcaatgtgagtaa--ggaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 876  Q
    |||||||||||||||||||||||||| ||  | ||||||||||||||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  25857226 agcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa 25857317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 780 - 895
Target Start/End: Original strand, 13465046 - 13465165
Alignment:
Q  780 aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 876  Q
    |||||||||||||||||||||||||||||||||| ||||  |||||||| |||||| |  |||||||||| | ||||||||||| |||||||||||||||    
T  13465046 aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa 13465145  T
Q  877 -atcttcaccctcaggtgga 895  Q
     |  ||||||||||||||||    
T  13465146 caagttcaccctcaggtgga 13465165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 790 - 953
Target Start/End: Original strand, 8252686 - 8252849
Alignment:
Q  790 cgtggaaaaccttctcaatgtgagtaaggaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccctca 889  Q
    |||||||||||||||||| |||||||||| |     |||||| |||||| ||||||| ||  || | ||||||||| ||||||||||| ||||| | | |    
T  8252686 cgtggaaaaccttctcaacgtgagtaaggta-----cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttta 8252780  T
Q  890 ggtggacctaacta----tgtatctcaatttgtagatacaactctca-caattggctcactatattttt 953  Q
    | ||||| ||| ||    ||||||||||||||||||||||||| |||  ||||| ||||||||||||||    
T  8252781 gatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatattttt 8252849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 782 - 895
Target Start/End: Original strand, 24379370 - 24379487
Alignment:
Q  782 aattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-a 877  Q
    ||||||| |||||||||||||||||||||||| ||||  |||||||||||| |  |  |||||||||| | ||||||||||| ||||| ||||||||| |    
T  24379370 aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaaca 24379469  T
Q  878 tcttcaccctcaggtgga 895  Q
     ||||||||| |||||||    
T  24379470 acttcacccttaggtgga 24379487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 699 - 749
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggca 749  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  24380163 tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca 24380113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 782 - 876
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
Q  782 aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 876  Q
    ||||||||||||||||||||||||||||| || |||| ||||||||||||||| |   |||||||||  || |||| ||| ||||||| |||||||    
T  27341025 aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa 27341120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 773 - 893
Target Start/End: Complemental strand, 17845969 - 17845847
Alignment:
Q  773 acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa 871  Q
    |||||| | |||||||| ||||||||||||| ||||||||| |||| |||||||| |||||  |   |||||||||  ||||||||||| ||||||| ||    
T  17845969 acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa 17845870  T
Q  872 tacaa-atcttcaccctcaggtg 893  Q
    ||||| | ||||||||| |||||    
T  17845869 tacaacaacttcacccttaggtg 17845847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 694 - 769
Target Start/End: Original strand, 24379274 - 24379347
Alignment:
Q  694 aattctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat 769  Q
    |||| |||||| ||||| || | ||||||| |||||||||||||| |||||||||||  ||| |||||||||||||    
T  24379274 aattgtgttggaaaatgtctacataatttctctcctccgtgaacttaaaataggcac--tagtggaaacgtaaaat 24379347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 782 - 847
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
Q  782 aattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaa 847  Q
    ||||||| |||||||||||||||||||| ||| ||||  |||||||||||||||   |||||||||||    
T  38994151 aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa 38994218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 6e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 699 - 895
Target Start/End: Complemental strand, 41481815 - 41481606
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 787  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  41481815 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 41481719  T
Q  788 agcgtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 882  Q
    ||||||||||||||||||||| |||| ||||   ||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  41481718 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 41481619  T
Q  883 accctcaggtgga 895  Q
    ||||| |||||||    
T  41481618 acccttaggtgga 41481606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 699 - 904
Target Start/End: Complemental strand, 36167813 - 36167596
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt 787  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |           ||||||||| || | ||||||    
T  36167813 tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt 36167717  T
Q  788 agcgtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 882  Q
    ||||||||||||||||||||| |||| ||||   |||||||| |||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  36167716 agcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 36167618  T
Q  883 accctcaggtggacctaactat 904  Q
    ||||| ||||||| || |||||    
T  36167617 acccttaggtggatctcactat 36167596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 704 - 892
Target Start/End: Original strand, 18951129 - 18951326
Alignment:
Q  704 ggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa 797  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||  |||||||||| | ||||      |  |    ||| ||||||||| ||||||    
T  18951129 ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcac--tagcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa 18951226  T
Q  798 accttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcaccctcaggt 892  Q
    |||||||||||||||| ||||   ||||||||| ||||  |  || ||||||| | ||||||||||| ||||||||||||||| | ||||||||| ||||    
T  18951227 accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaacaacttcacccttaggt 18951326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 699 - 895
Target Start/End: Complemental strand, 2936 - 2727
Alignment:
Q  699 tgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt 787  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||  ||||||||||| ||||           |||||| || | ||||||    
T  2936 tgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt 2840  T
Q  788 agcgtggaaaaccttctcaatgtgagtaagg---aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc 882  Q
    |||||||||||||||||||||||||| ||||   ||||||||||||||| |  |||||||||| | ||||||||||| ||||||||||||||| | ||||    
T  2839 agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc 2740  T
Q  883 accctcaggtgga 895  Q
    ||||| |||||||    
T  2739 acccttaggtgga 2727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 698 - 904
Target Start/End: Original strand, 9757211 - 9757431
Alignment:
Q  698 ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt 786  Q
    ||||||| |||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||||| ||||           |||||| || | |||||    
T  9757211 ctgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt 9757307  T
Q  787 tagcgtggaaaaccttctcaatgtgagtaagg--aaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atct 880  Q
    ||||||||||||||||||||||||||| ||||  ||||||||||||||| |  ||||||||||     ||||||||||| ||||||||||||||| | ||    
T  9757308 tagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaact 9757407  T
Q  881 tcaccctcaggtggacctaactat 904  Q
    ||||||| ||||||| || |||||    
T  9757408 tcacccttaggtggatctcactat 9757431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 780 - 876
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
Q  780 aaaattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa 876  Q
    ||||||||||| |||||||||||||||||||||  |||| |||| |||||||||| ||||| |||||||  |||||||||||||||||  ||||||||    
T  37286972 aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa 37287069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 782 - 893
Target Start/End: Original strand, 42682924 - 42683038
Alignment:
Q  782 aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-at 878  Q
    ||||| |||||||||||||||||||||||||| |||| |||| |||||||||| |   ||||||||| | ||||||||||| ||||||||||||||| |     
T  42682924 aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaacaa 42683023  T
Q  879 cttcaccctcaggtg 893  Q
    ||||||||| |||||    
T  42683024 cttcacccttaggtg 42683038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 698 - 876
Target Start/End: Original strand, 342216 - 342404
Alignment:
Q  698 ctgttgggaaatgcctgcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgaca---------cacaacaaaatttta 788  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||||||||  ||| ||||||| ||||   |         ||||| | |||||||    
T  342216 ctgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact--agcagaaacgtgaaatataagcgtaatgacacaa-agaatttta 342312  T
Q  789 gcgtggaaaaccttctcaatgtgagtaa-gga--aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa 876  Q
    ||||| |||||||||||||| |||| || |||  ||||||||||| || |  |||||||||| | ||||||||||| |||||||||||||||    
T  342313 gcgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa 342404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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