View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5211-Insertion-3 (Length: 422)
Name: NF5211-Insertion-3
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5211-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 11297150 - 11297565
Alignment:
| Q |
7 |
agctacttgttctcacagaaatttgtccactacgtttgttgttcaatccagcacgaacagccatcttataactacgtccggtagaaaattgagactgcaa |
106 |
Q |
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| T |
11297150 |
agctacttgttctcacagaaatttgtccactacgtttgttgttcaatccagcacgaacagccatcttataactacgtccgatagaaaattgagactgcaa |
11297249 |
T |
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| Q |
107 |
attcgcgcctaaagccaattctcctctccacttcaccagagaaagactcaatgaagattgatcctgacctattggaaaatccgcctctttaaaccgcact |
206 |
Q |
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| T |
11297250 |
attcgcgcctaaagccaattctcctctccacttcaccagagaaagactcaatgaagattgatcctgacctattggaaaatccgcctctttaaaccgcact |
11297349 |
T |
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| Q |
207 |
tctacgttcgtgccataagcagagtcaccttgagacctcataagcccagcacttcctattaacaacaagcattttccaagagctatctgatcctcaactt |
306 |
Q |
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| T |
11297350 |
tctacgttcgtgccataagcagaatcaccttgagacctcataagcccagcacttcccattaacaacaagcattttccaagagctatctgatcctcaactt |
11297449 |
T |
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| Q |
307 |
tcaatccagtagatacattttcgcccaaaaacgtcgcagacacaccggcacaagttttatttcttttgaaattcttgaattccgtctctcccctaatgac |
406 |
Q |
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| T |
11297450 |
tcaatccagtagatacattttcgcccaaaaacgtcgcagacacaccggcacaagttttatttcttttgaaattcttgaattccgtctctcccctaacgac |
11297549 |
T |
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| Q |
407 |
gtagactagttgcttt |
422 |
Q |
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| T |
11297550 |
gtaggctagttgcttt |
11297565 |
T |
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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 36609656 - 36609278
Alignment:
| Q |
9 |
ctacttgttctcacagaaatttgtccactacgtttgttgttcaatccagcacgaacagccatcttataactacgtccggtagaaaattgagactgcaaat |
108 |
Q |
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| T |
36609656 |
ctacttgtcctcacagtgatctgtccactaagcttgttgttcaatcccgcacgaaccgccatcttatagcttcgcccaagagaaatctgtgactggaaat |
36609557 |
T |
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| Q |
109 |
tcgcgcctaaagccaattctcctctccacttcaccagagaaagactcaatgaagattgatcctgacctattggaaaatccgcctctttaaaccgcacttc |
208 |
Q |
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| T |
36609556 |
tggctcccaaggctaaatcacctctccactgcaccagagagaaactcaatgaagactgatcctgtccaattggaaaatctgcctctctaagcctcacttc |
36609457 |
T |
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| Q |
209 |
tacgttcgtgccataagcagagtcaccttgagacctcataagcccagcacttcctattaacaacaagcattttccaagagctatctgatcctcaactttc |
308 |
Q |
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| T |
36609456 |
aacattggctccataagcagaatcaccttgagaccgcacggtcccagtgctccccactaataccaatcgtttccccagtgctagttgatcctcaagtttc |
36609357 |
T |
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| Q |
309 |
aatccagtagatacattttcgcccaaaaacgtcgcagacacaccggcacaagttttatttcttttgaaattcttgaatt |
387 |
Q |
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| T |
36609356 |
acaccggtggacacattttcacccaaaaatgtcacagatactccagctgcagttttatttcttttgaaatttttgaatt |
36609278 |
T |
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