View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5211-Insertion-4 (Length: 348)

Name: NF5211-Insertion-4
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5211-Insertion-4
NF5211-Insertion-4
[»] chr7 (11 HSPs)
chr7 (8-348)||(21814577-21814917)
chr7 (13-68)||(1454939-1454994)
chr7 (118-202)||(20920338-20920422)
chr7 (97-205)||(1454820-1454929)
chr7 (154-225)||(10827295-10827365)
chr7 (154-225)||(11021087-11021157)
chr7 (154-209)||(17147922-17147977)
chr7 (169-225)||(39888088-39888144)
chr7 (169-201)||(15562364-15562396)
chr7 (135-203)||(19802248-19802315)
chr7 (135-199)||(21959227-21959290)
[»] chr3 (11 HSPs)
chr3 (8-348)||(16463117-16463457)
chr3 (80-209)||(381637-381765)
chr3 (169-225)||(21950032-21950087)
chr3 (169-225)||(19243156-19243211)
chr3 (169-224)||(3575205-3575258)
chr3 (154-225)||(22800464-22800534)
chr3 (169-205)||(38094205-38094241)
chr3 (154-225)||(7464644-7464714)
chr3 (154-200)||(22805286-22805332)
chr3 (135-203)||(14521666-14521733)
chr3 (135-203)||(19359887-19359954)
[»] chr4 (9 HSPs)
chr4 (19-229)||(24854512-24854723)
chr4 (154-225)||(10667698-10667767)
chr4 (154-225)||(10881843-10881912)
chr4 (169-225)||(14817790-14817845)
chr4 (154-225)||(24697736-24697806)
chr4 (125-225)||(28086005-28086105)
chr4 (169-201)||(14283637-14283669)
chr4 (167-205)||(15688218-15688256)
chr4 (139-199)||(6735764-6735823)
[»] chr5 (9 HSPs)
chr5 (24-88)||(17304125-17304189)
chr5 (135-270)||(21098886-21099023)
chr5 (167-205)||(16080208-16080246)
chr5 (127-219)||(22752104-22752195)
chr5 (154-201)||(21165009-21165056)
chr5 (169-270)||(28739495-28739599)
chr5 (141-205)||(22301881-22301944)
chr5 (169-201)||(21493280-21493312)
chr5 (135-203)||(41527878-41527945)
[»] chr6 (6 HSPs)
chr6 (154-224)||(15594326-15594395)
chr6 (125-209)||(14733680-14733764)
chr6 (154-218)||(16261569-16261632)
chr6 (154-201)||(9344932-9344979)
chr6 (156-210)||(6634580-6634633)
chr6 (154-194)||(9340757-9340797)
[»] chr2 (7 HSPs)
chr2 (154-225)||(21889070-21889140)
chr2 (154-222)||(19616-19683)
chr2 (154-222)||(21339145-21339212)
chr2 (154-210)||(16879062-16879118)
chr2 (154-210)||(16991195-16991251)
chr2 (139-225)||(38211324-38211411)
chr2 (169-201)||(29791404-29791436)
[»] chr8 (8 HSPs)
chr8 (127-220)||(23808309-23808400)
chr8 (154-225)||(30613102-30613172)
chr8 (169-225)||(25238781-25238836)
chr8 (154-225)||(24715869-24715938)
chr8 (123-205)||(25003996-25004077)
chr8 (169-204)||(18005589-18005624)
chr8 (154-201)||(21539967-21540014)
chr8 (135-203)||(5557124-5557191)
[»] scaffold0240 (1 HSPs)
scaffold0240 (154-222)||(9806-9873)
[»] scaffold0042 (1 HSPs)
scaffold0042 (154-225)||(10619-10690)
[»] scaffold0005 (1 HSPs)
scaffold0005 (169-225)||(21866-21921)
[»] chr1 (8 HSPs)
chr1 (169-225)||(23308822-23308877)
chr1 (154-209)||(8046541-8046596)
chr1 (154-225)||(10216556-10216626)
chr1 (154-201)||(43517199-43517246)
chr1 (156-201)||(24058454-24058499)
chr1 (159-205)||(9324-9370)
chr1 (139-205)||(7064027-7064092)
chr1 (135-205)||(14150140-14150209)
[»] scaffold0188 (1 HSPs)
scaffold0188 (154-200)||(12872-12918)
[»] scaffold0627 (1 HSPs)
scaffold0627 (154-225)||(1649-1720)
[»] scaffold0158 (1 HSPs)
scaffold0158 (135-203)||(8-75)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 21814917 - 21814577
Alignment:
Q  8 caggcatatgttagaaagttcagataacgatcttagtatcatatgatcgttcaggtatgtagagcacacacgcacgtataatcaacctcaatgggttgtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21814917 caggcatatgttagaaagttcagataacgatcttagtatcatatgatcgttcaggtatgtagagtacacacgcacgtataatcaacctcaatgggttgtg 21814818  T
Q  108 tgtagccaggtggcaatcataggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgt 207  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21814817 tgtagctaggtggcaatcgtaggttttcccgagattgcccacatcttaggattaggtgaagctcactgagatattatgtctcatcccaatccttttatgt 21814718  T
Q  208 ttgcagatcagcaggttgcttgtagcgataagtagcagttatgtagctggatggattatcgtcgagtactcgttcgatataaggtttcttcagatatgat 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21814717 ttgcagatcagtaggttgcttgtagcgataagtagcagttatgtagctggatggattatcgtcgagtactcgttcgatataaggtgtcttcagatatgat 21814618  T
Q  308 gtgttagcaatatgaggtttcaaaaaagaataacaaagaga 348  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  21814617 gtgttagcaatatgaggtttcaaaagagaataacaaagaga 21814577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 1454994 - 1454939
Alignment:
Q  13 atatgttagaaagttcagataacgatcttagtatcatatgatcgttcaggtatgta 68  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  1454994 atatgttagatagttcagataacgatcttagtatctcatgatcgttcaggtatgta 1454939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 20920338 - 20920422
Alignment:
Q  118 tggcaatcataggttttccc-gagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttt 202  Q
    |||||||||||||||||||| ||||||||| ||| | |||||| ||||| | ||||||||||||| ||| ||||||||||||||||    
T  20920338 tggcaatcataggttttccccgagattgcctacaacctaggat-aggtggaactcactgagacatcatgcctcatcccaatccttt 20920422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 1454929 - 1454820
Alignment:
Q  97 aatgggttgtgtgtagccaggtggcaatcataggttttccc--gagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatccc 194  Q
    ||||||||| || ||| ||| |||| |||||||||||||||  ||||||||| | | | |||||| || || | |||||||||||||| |||||||||||    
T  1454929 aatgggttgagtatagtcagatggcgatcataggttttcccccgagattgcctagagcctaggat-agatggaactcactgagacattctgtctcatccc 1454831  T
Q  195 aatccttttat 205  Q
    |||||||||||    
T  1454830 aatccttttat 1454820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 10827365 - 10827295
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||    
T  10827365 taggattaggtagaactcactgagacattatgtctcatcccaatccttatttattt-cagatcagcaggttg 10827295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 11021157 - 11021087
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||    
T  11021157 taggattaggtagaactcactgagacattatgtctcatcccaatccttatttattt-cagatcagcaggttg 11021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 17147922 - 17147977
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgttt 209  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| || |||||    
T  17147922 taggattaggtagaactcactgagacattatgtctcatcccaatcctattttgttt 17147977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 39888144 - 39888088
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatc-agcaggttg 225  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||| |||||||||    
T  39888144 ctcactgagacattatgtctcatcccaatccttatttgttt-cagatcaagcaggttg 39888088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 15562364 - 15562396
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||||||||||||||||||||||||    
T  15562364 ctcactgagacattatgtctcatcccaatcctt 15562396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 19802315 - 19802248
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcctttt 203  Q
    |||||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| ||||||||||||    
T  19802315 cccgagattgcctacagcctaggat-aggtggaactcactgagacattttgtctcaccccaatcctttt 19802248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 21959227 - 21959290
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcc 199  Q
    |||||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| ||||||||    
T  21959227 cccgagattgcctacagcctaggat-aggtggaactcactgagacattttgtctcaccccaatcc 21959290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 16463457 - 16463117
Alignment:
Q  8 caggcatatgttagaaagttcagataacgatcttagtatcatatgatcgttcaggtatgtagagcacacacgcacgtataatcaacctcaatgggttgtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16463457 caggcatatgttagaaagttcagataacgatcttagtatcatatgatcgttcaggtatgtagagtacacacgcacgtataatcaacctcaatgggttgtg 16463358  T
Q  108 tgtagccaggtggcaatcataggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgt 207  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  16463357 tgtagctaggtggcaatcgtaggttttcccgagattgcccacatcttaggattaggtgaagctcactgagatattatgtctcatcccaatccttttatgt 16463258  T
Q  208 ttgcagatcagcaggttgcttgtagcgataagtagcagttatgtagctggatggattatcgtcgagtactcgttcgatataaggtttcttcagatatgat 307  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16463257 ttgcagatcagtaggttgcttgtagcgataagtagcagttatgtagctggatggattatcgtcgagtactcgttcgatataaggtgtcttcagatatgat 16463158  T
Q  308 gtgttagcaatatgaggtttcaaaaaagaataacaaagaga 348  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  16463157 gtgttagcaatatgaggtttcaaaagagaataacaaagaga 16463117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 381637 - 381765
Alignment:
Q  80 cacgtataatcaacctcaatgggttgtgt-gtagccaggtggcaatcataggttttcccgagattgcccacatcttaggattaggtgaagctcactgaga 178  Q
    |||||||||||||| | ||||| |||||| |||| || |||| || |||| |||| |||||| ||||| | | | |||||||||||  | |||| |||||    
T  381637 cacgtataatcaac-tgaatgg-ttgtgttgtagacacgtggtaaccataagtttccccgaggttgcctatagcataggattaggtagaactcattgaga 381734  T
Q  179 cattatgtctcatcccaatccttttatgttt 209  Q
    |||||||||||||||||||||||||||||||    
T  381735 cattatgtctcatcccaatccttttatgttt 381765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 21950087 - 21950032
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  21950087 ctcactgagacattatgtctcatcccaatccttatttgttt-cagatcagcaggttg 21950032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 19243211 - 19243156
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  19243211 ctcactgagacattatgtctcatcccaatccttatttgttt-cagattagcaggttg 19243156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 3575258 - 3575205
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggtt 224  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  3575258 ctcactgagacattatgtctcatcccaatcctttt-tgttt-cagataagcaggtt 3575205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 22800534 - 22800464
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||| ||||||||||||| ||||||||||||| || ||||| |||||||||||||||    
T  22800534 taggattaggtagaactcattgagacattatgtgtcatcccaatcctattttgttt-cagatcagcaggttg 22800464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 38094205 - 38094241
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttat 205  Q
    |||||||||||||||||||||||| ||||||||||||    
T  38094205 ctcactgagacattatgtctcatctcaatccttttat 38094241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 7464714 - 7464644
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||||| |||||||||||||||| ||||||||| | ||||| |||||||||| ||||    
T  7464714 taggattaggtagaactcactaagacattatgtctcatgccaatccttatttgttt-cagatcagcaagttg 7464644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 22805332 - 22805286
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatcct 200  Q
    |||||||||||  | |||| |||||||||||||||||||||||||||    
T  22805332 taggattaggtagaactcaatgagacattatgtctcatcccaatcct 22805286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 14521666 - 14521733
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcctttt 203  Q
    |||||||||||| ||| | |||||| ||||| | |||||| ||||||| ||||||| ||||||||||||    
T  14521666 cccgagattgcctacagcctaggat-aggtggaactcactaagacattttgtctcaccccaatcctttt 14521733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 19359887 - 19359954
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcctttt 203  Q
    |||||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| |||||| |||||    
T  19359887 cccgagattgcctacagcctaggat-aggtggaactcactgagacattttgtctcaccccaattctttt 19359954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 24854723 - 24854512
Alignment:
Q  19 tagaaagttcagataacgatcttagtatcatatgatcgttcaggtatgtagagcacacacgcacgtataatcaacctcaatgggttgtgtgtagccaggt 118  Q
    ||||||||||||||||||||||||| ||| || ||| ||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| || ||    
T  24854723 tagaaagttcagataacgatcttagcatcttacgattgttcaggcatgtagagcacacacgcacatataatcaaccttaatgggttatgtgtagacaagt 24854624  T
Q  119 ggcaatcataggttt-tcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatca 217  Q
    ||||||| |||||||  ||| |||||| | | | | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| || || |    
T  24854623 ggcaatcgtaggtttcccccaagattgtctatagcctaggattagatggagctcactgagacattatgtctcatcccaatccttttatgtttacaaatta 24854524  T
Q  218 gcaggttgcttg 229  Q
    | ||||||||||    
T  24854523 gaaggttgcttg 24854512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 10667767 - 10667698
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  10667767 taggattaggtagaactcactgagacattatgtctcatcccaatcctctt-tgttt-cagatcagcaggttg 10667698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 10881912 - 10881843
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  10881912 taggattaggtagaactcactgagacattatgtctcatcccaatcctctt-tgttt-cagatcagcaggttg 10881843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 14817790 - 14817845
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||    
T  14817790 ctcactgagacattatgtctcatcccaatccttatttgttt-cagatcagcacgttg 14817845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 24697736 - 24697806
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||||||||||||||| | |||||||||||||| | ||||| |||||||||||||||    
T  24697736 taggattaggtagaactcactgagacattatttatcatcccaatccttatttgttt-cagatcagcaggttg 24697806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 28086105 - 28086005
Alignment:
Q  125 cataggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatc-agcaggt 223  Q
    ||||||||| |||||| || || | | | |||||||||||  | ||||||||||||||||||||||| ||||||||| | ||||| |||||| |||||||    
T  28086105 cataggtttccccgaggttacctatagcctaggattaggtagaactcactgagacattatgtctcattccaatccttatttgttt-cagatcaagcaggt 28086007  T
Q  224 tg 225  Q
    ||    
T  28086006 tg 28086005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 14283637 - 14283669
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||||||||||||||||||||||||    
T  14283637 ctcactgagacattatgtctcatcccaatcctt 14283669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 15688218 - 15688256
Alignment:
Q  167 agctcactgagacattatgtctcatcccaatccttttat 205  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  15688218 agctcattgagactttatgtctcatcccaatccttttat 15688256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 6735764 - 6735823
Alignment:
Q  139 agattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcc 199  Q
    ||||| || ||| |||||||| ||||| | ||||||||||||| |||||||||||||||||    
T  6735764 agatttcctacagcttaggat-aggtggaactcactgagacatcatgtctcatcccaatcc 6735823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 17304125 - 17304189
Alignment:
Q  24 agttcagataacgatcttagtatcatatgatcgttcaggtatgtagagcacacacgcacgtataa 88  Q
    ||||||||||||||||||||||||  ||||||||| |||||| ||||||||||||||||||||||    
T  17304125 agttcagataacgatcttagtatctcatgatcgttgaggtatttagagcacacacgcacgtataa 17304189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 21099023 - 21098886
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttat---gtttgcagatcagcaggttgcttgta 231  Q
    |||| ||||||||||| | |||||| ||||| | |||||||| ||||| ||||||||| ||||||||||||    ||| |||| |||||||||||| |||    
T  21099023 cccgcgattgcccacagcctaggat-aggtggaactcactgaaacattctgtctcatctcaatccttttatttattttacagagcagcaggttgctcgta 21098925  T
Q  232 gcgataagtagcagttatgtagctggatggattatcgtc 270  Q
    || | | ||||||| | |||||||| |||||| ||||||    
T  21098924 gcaagatgtagcagatgtgtagctgaatggatcatcgtc 21098886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 16080208 - 16080246
Alignment:
Q  167 agctcactgagacattatgtctcatcccaatccttttat 205  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16080208 agctcactgagacattatgtctcatcccaatccttttat 16080246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 22752195 - 22752104
Alignment:
Q  127 taggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagc 219  Q
    ||||||| |||||| || || ||| | || ||||||||  | ||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  22752195 taggtttccccgaggttacctacaacctaagattaggtagaactcactgagacattatgtctcatcccaatccttatttgttt-cagatcagc 22752104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 21165056 - 21165009
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||    
T  21165056 taggattaggtagaactcactgagacattatgtctcatcccaatcctt 21165009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 28739599 - 28739495
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttat---gtttgcagatcagcaggttgcttgtagcgataagtagcagttatgtagctggatggatta 265  Q
    |||||||||||||   |||||||||||||||||||||    ||| |||||||||||||| || ||||| | | |||| || |||||||||| |||||| |    
T  28739599 ctcactgagacatctcgtctcatcccaatccttttatttattttacagatcagcaggttactcgtagcaagaggtagaagatatgtagctgaatggatca 28739500  T
Q  266 tcgtc 270  Q
    |||||    
T  28739499 tcgtc 28739495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 22301944 - 22301881
Alignment:
Q  141 attgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttat 205  Q
    |||||| ||| |||||||| ||||| | |||||| |||||| |||||||||||||||||||||||    
T  22301944 attgcctacaacttaggat-aggtggaactcactaagacatcatgtctcatcccaatccttttat 22301881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 21493312 - 21493280
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||||||||||||| ||||||||||    
T  21493312 ctcactgagacattatgtctcaacccaatcctt 21493280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 41527945 - 41527878
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcctttt 203  Q
    |||||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| |||||| |||||    
T  41527945 cccgagattgcctacagcctaggat-aggtggaactcactgagacattttgtctcaccccaattctttt 41527878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 15594326 - 15594395
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggtt 224  Q
    |||||||||||  | |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15594326 taggattaggtagaactcactgagacattatgtcttatcccaatccttttatgttt-cagatcagcaggtt 15594395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 14733680 - 14733764
Alignment:
Q  125 cataggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgttt 209  Q
    ||||||||| |||||| ||||| | | | |||||||| || || |||||||||||| |||||||||||||||| |||||||||||    
T  14733680 cataggtttccccgaggttgcctatagcctaggattaagtaaaactcactgagacaatatgtctcatcccaatacttttatgttt 14733764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 16261632 - 16261569
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcag 218  Q
    |||||||||||  | |||||| |||||||||||||||||||||||||| | ||||| ||||||||    
T  16261632 taggattaggtagaactcactaagacattatgtctcatcccaatccttatttgttt-cagatcag 16261569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 9344979 - 9344932
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||  |  ||||||||||||||||||||||||||||||||    
T  9344979 taggattaggtagaattcactgagacattatgtctcatcccaatcctt 9344932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 6634633 - 6634580
Alignment:
Q  156 ggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttg 210  Q
    |||||||||  | |||| |||||||||||||||||| ||||||||||||||||||    
T  6634633 ggattaggtagaactcagtgagacattatgtctcat-ccaatccttttatgtttg 6634580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 9340757 - 9340797
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatccc 194  Q
    |||||||||||  | ||||||||||||||||||||||||||    
T  9340757 taggattaggtagaactcactgagacattatgtctcatccc 9340797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 21889070 - 21889140
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  21889070 taggattaggtagaactcactgagacattatgtctcatcccaatccgtttttgttt-cagatcagcaggttg 21889140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 19616 - 19683
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcagg 222  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  19616 taggattaggtagaactcactgagacattatgtctcatcccaatcctattttgttt-cagatcagcagg 19683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 21339145 - 21339212
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcagg 222  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  21339145 taggattaggtagaactcactgagacattatgtctcatcccaatccttatttgttt-cagatcagcagg 21339212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 16879062 - 16879118
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttg 210  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| | ||||||    
T  16879062 taggattaggtagaactcactgagacattatgtctcatcccaatccttatttgtttg 16879118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 16991195 - 16991251
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttg 210  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| | ||||||    
T  16991195 taggattaggtagaactcactgagacattatgtctcatcccaatccttatttgtttg 16991251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 38211411 - 38211324
Alignment:
Q  139 agattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgt--ttgcagatcagcaggttg 225  Q
    |||||||| ||| |||||||| ||||| | |||||||||| ||  ||||||| |||||||||||||| |  || |||||||||||||||    
T  38211411 agattgcctacaacttaggat-aggtggaactcactgagagatcctgtctcaccccaatccttttattttatttcagatcagcaggttg 38211324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 201
Target Start/End: Original strand, 29791404 - 29791436
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatcctt 201  Q
    ||||||||||||||||||||||||||| |||||    
T  29791404 ctcactgagacattatgtctcatcccattcctt 29791436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 23808309 - 23808400
Alignment:
Q  127 taggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagca 220  Q
    ||||||| |||||| | ||||| | | |||||||||||  | ||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  23808309 taggtttccccgaggtcgcccatagcctaggattaggtagacctcactgagacattatgtctcatcccaatcctttt-tgttt-cagatcagca 23808400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 30613172 - 30613102
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||    
T  30613172 taggattaggtagaactcactgagacattatgtctcatcccaatccttatttgttt-cagatcaacaggttg 30613102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 25238836 - 25238781
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||    
T  25238836 ctcactgagacattatgtctcatcccaatcctcttttgttt-cagattagcaggttg 25238781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 24715869 - 24715938
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | ||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||    
T  24715869 taggattaggtagaactcactgagactttatgtctcatcccaatcctttt-tgttt-catatcagcaggttg 24715938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 25003996 - 25004077
Alignment:
Q  123 atcataggttttcccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttat 205  Q
    ||||||||||| || ||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| |||||||| |||||    
T  25003996 atcataggtttccctgagattgcctacagcctaggat-aggtggaactcactgagacattctgtctcaccccaatccctttat 25004077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 204
Target Start/End: Original strand, 18005589 - 18005624
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatcctttta 204  Q
    |||||||||||||||| |||||||||||||||||||    
T  18005589 ctcactgagacattatatctcatcccaatcctttta 18005624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 21539967 - 21540014
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||  | ||||||||||||||||||||| |||||||||||    
T  21539967 taggattaggtagaactcactgagacattatgtctcgtcccaatcctt 21540014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 5557191 - 5557124
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcctttt 203  Q
    |||||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| |||||| |||||    
T  5557191 cccgagattgcctacagcctaggat-aggtggaactcactgagacattttgtctcaccccaattctttt 5557124  T

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Target: scaffold0240 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 9806 - 9873
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcagg 222  Q
    |||||||||||  | | ||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  9806 taggattaggtagaacccactgagacattatgtctcatcccaatccttatttgttt-cagatcagcagg 9873  T

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Target: scaffold0042 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 10619 - 10690
Alignment:
Q  154 taggattaggtgaagctcactgagacat-tatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | ||||||||||||| |||||||||||||||||||| | ||||| |||||||||||||||    
T  10619 taggattaggtagaactcactgagacatatatgtctcatcccaatccttatttgttt-cagatcagcaggttg 10690  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 21921 - 21866
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||    
T  21921 ctcactgagacattatgtctcatcccaatccttatttgttt-cagatcagcacgttg 21866  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 23308822 - 23308877
Alignment:
Q  169 ctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||    
T  23308822 ctcactgagacattatgtctcatcccaatccttatttgttt-cagatcatcaggttg 23308877  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 8046596 - 8046541
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgttt 209  Q
    |||||||||||  | |||||||||||||||||||||||||||||||| || |||||    
T  8046596 taggattaggtagaactcactgagacattatgtctcatcccaatcctattttgttt 8046541  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 10216556 - 10216626
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||||| ||||||| |||||||||||||||||| | ||||| |||||||||||||||    
T  10216556 taggattaggtagaactcactaagacattgtgtctcatcccaatccttatttgttt-cagatcagcaggttg 10216626  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 43517199 - 43517246
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||    
T  43517199 taggattaggtagaactcactgagacattatgtctcatcccaatcctt 43517246  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 24058454 - 24058499
Alignment:
Q  156 ggattaggtgaagctcactgagacattatgtctcatcccaatcctt 201  Q
    |||||||||  | |||||||||||||||||||||||||||||||||    
T  24058454 ggattaggtagaactcactgagacattatgtctcatcccaatcctt 24058499  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 9370 - 9324
Alignment:
Q  159 ttaggtgaagctcactgagacattatgtctcatcccaatccttttat 205  Q
    ||||||| |||||||| ||| |||||||||||||||||||| |||||    
T  9370 ttaggtggagctcactaagatattatgtctcatcccaatccatttat 9324  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 205
Target Start/End: Complemental strand, 7064092 - 7064027
Alignment:
Q  139 agattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttat 205  Q
    |||||||| ||| | |||||| ||||| | |||||||||||||||||||||| || |||||||||||    
T  7064092 agattgcctacaacctaggat-aggtggaactcactgagacattatgtctcaccctaatccttttat 7064027  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 14150140 - 14150209
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatccttttat 205  Q
    |||||||||||| |||  ||||||| ||||| | ||||| ||||||| |||||||| ||||||||||||||    
T  14150140 cccgagattgcctacagtttaggat-aggtggaactcaccgagacatcatgtctcaccccaatccttttat 14150209  T

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Target: scaffold0188 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 12918 - 12872
Alignment:
Q  154 taggattaggtgaagctcactgagacattatgtctcatcccaatcct 200  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||    
T  12918 taggattaggtagaactcactgagacattatgtctcatcccaatcct 12872  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 1649 - 1720
Alignment:
Q  154 taggattaggtgaagctcactgagacatt-atgtctcatcccaatccttttatgtttgcagatcagcaggttg 225  Q
    |||||||||||  | |||||||||||||| ||||||||||||||||||| | ||||| |||||||||| ||||    
T  1649 taggattaggtagaactcactgagacatttatgtctcatcccaatccttatttgttt-cagatcagcatgttg 1720  T

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Target: scaffold0158 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 8 - 75
Alignment:
Q  135 cccgagattgcccacatcttaggattaggtgaagctcactgagacattatgtctcatcccaatcctttt 203  Q
    |||||||||||| ||| | |||||| ||||| | |||||||||||||| ||||||| ||||||||||||    
T  8 cccgagattgcctacagcctaggat-aggtggaactcactgagacattttgtctcaccccaatcctttt 75  T

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