View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5211_high_1 (Length: 964)
Name: NF5211_high_1
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5211_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 361 - 789
Target Start/End: Original strand, 15933895 - 15934320
Alignment:
| Q |
361 |
ataaatagagcaagtgtgccaaagattattccttaagtagcacttaattatatattatatgaggaatatcacaaccaattacgctcaaggttaatgagct |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15933895 |
ataaatagagcaagtgtgccaaagattattccttaagtaacacttaattatatattatatgaggaatatcacaaccaattacgctcaaggttaatgagct |
15933994 |
T |
|
| Q |
461 |
tcactgaaggatagattgtttaggacaacttcaatttgattcttctgttgaacaatcttttatcatgctttacttattttgtgaccgtactccaaattat |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||| | |||||||||||||||||| |
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| T |
15933995 |
tcactgaaggatagattgtttaggacaacttcaatttgatttttcggtggaacaattttttatcatgctttacttacctcccgaccgtactccaaattat |
15934094 |
T |
|
| Q |
561 |
cagggccctccttccacatggaaccggatggttaacacacaaaaaatataaggaatattatagatagattgttctaacttttccaaatgagaccctaccc |
660 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15934095 |
caggaccctccttcgacatggaaccggatggttaacacacaaaaaatataaggaatattatagatagattgttctaacttttccaaatgagaccctaccc |
15934194 |
T |
|
| Q |
661 |
ttaaacgttgtggcaatgatcaataagatataaacataattacttaagatagagaatggtttgcttgaattgattcaagaccacaacatgcttcttacgt |
760 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
15934195 |
ttaaacgttgtggcaatgatcaataagatataaacataattactttagatagagaatggtttgcttgaattgattcaagaccacagcatg---cttacgt |
15934291 |
T |
|
| Q |
761 |
ttgtgttgcaaggagaaaaaacaaattag |
789 |
Q |
| |
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| T |
15934292 |
cagtgttgcaaggagaaaaaacaaattag |
15934320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 149 - 364
Target Start/End: Original strand, 15931509 - 15931725
Alignment:
| Q |
149 |
tatatggtgaagatgcacacactcacaaaatttgatttgaagatgcaccaccacaagataatttgtactttcttgtagnnnnnnntgcatcattggttaa |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15931509 |
tatatggtgaagatgcacacactcacaaaatttgatttgaagatccaccaccacaagataatttgtactttcttgtagaaaaaaatgcatcattggttaa |
15931608 |
T |
|
| Q |
249 |
ttgggtcgttttgct--tnnnnnnnttaattaagagacctatcaaatggattatcaagttattcgtgcaaatataaggacaaatatgtcatgcacattta |
346 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
15931609 |
ttgggtcgttttgctaaaaagaaaattaattaagagacctatcaaatggattaccaagttattcgtgcaaatataaggacaaatatgtcatgcac-tcta |
15931707 |
T |
|
| Q |
347 |
gtatttctcatattataa |
364 |
Q |
| |
|
|||||||||||||||||| |
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| T |
15931708 |
gtatttctcatattataa |
15931725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 15931379 - 15931452
Alignment:
| Q |
18 |
ctactaagttcaatattataagtgtgggcgacatcctttgcgcacgacaattaacaacacaccatttgttttgtt |
92 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15931379 |
ctactaagt-caatattataagagtgggcgacatcctttgcgcacgacaattaacaacacaccatttgttttgtt |
15931452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 433
Target Start/End: Complemental strand, 15011262 - 15011192
Alignment:
| Q |
363 |
aaatagagcaagtgtgccaaagattattccttaagtagcacttaattatatattatatgaggaatatcaca |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| ||| ||||||| | ||||||| ||||||||| |
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| T |
15011262 |
aaatagagcaagtgtgccaaagattattccgtatgtagctcttcattatatgtcatatgagcaatatcaca |
15011192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 14291696 - 14291628
Alignment:
| Q |
363 |
aaatagagcaagtgtgccaaagattattccttaagtagcacttaattatatattatatgaggaatatca |
431 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||| ||| ||||||| | ||||||| ||||||| |
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| T |
14291696 |
aaatagagcaagtatgccaaagattattccttatgcagctcttcattatatgtcatatgagaaatatca |
14291628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 775 - 815
Target Start/End: Original strand, 14741236 - 14741276
Alignment:
| Q |
775 |
gaaaaaacaaattaggtgagtattaccatttcttaaattat |
815 |
Q |
| |
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||||||||||||||||||| | ||||||||||||||||||| |
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| T |
14741236 |
gaaaaaacaaattaggtgactgttaccatttcttaaattat |
14741276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 737
Target Start/End: Original strand, 14741142 - 14741205
Alignment:
| Q |
674 |
caatgatcaataagatataaacataattacttaagatagagaatggtttgcttgaattgattca |
737 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||| |||||| ||||| ||| | ||| ||||||| |
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|
| T |
14741142 |
caatgatcaacaagatacaaacataattacttaggatagaaaatggcttgatcgaactgattca |
14741205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 363 - 413
Target Start/End: Complemental strand, 14284526 - 14284476
Alignment:
| Q |
363 |
aaatagagcaagtgtgccaaagattattccttaagtagcacttaattatat |
413 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| | ||| ||| ||||||| |
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| T |
14284526 |
aaatagagcaagtatgccaaagattattccttacgcagctcttcattatat |
14284476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 673 - 753
Target Start/End: Complemental strand, 14291472 - 14291394
Alignment:
| Q |
673 |
gcaatgatcaataagatataaacataattacttaagatagagaatggtttgcttgaattgattcaagaccacaacatgctt |
753 |
Q |
| |
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||||||||||| ||||||||||||| ||||| || |||||| ||||| || ||||| |||||||| | ||||||| |||| |
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| T |
14291472 |
gcaatgatcaacaagatataaacatgattacataggatagaaaatgg--tgtttgaactgattcaacatcacaacaagctt |
14291394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 859 - 944
Target Start/End: Original strand, 36002915 - 36003000
Alignment:
| Q |
859 |
ctccaaattagagagaccgcaactttaaattatgtctactcaaatggtgtttaaaaagaattgtagcatatataaaatcattttta |
944 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36002915 |
ctccaaattagagagaccgcaactttaaattatgtctactcaaatagtgtttaaaaagaattgtagcatatataaaatcattttta |
36003000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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