View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5211_high_3 (Length: 251)
Name: NF5211_high_3
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5211_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 21817442 - 21817676
Alignment:
| Q |
1 |
tttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccactttactaaacagtatt |
100 |
Q |
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| T |
21817442 |
tttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccactttactaaacagtatt |
21817541 |
T |
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| Q |
101 |
gnnnnnnnnncattcttgttagtattttcacgtgtttttccacagaaaaagtctcctcacatttcatgctttgagacatatatatacagaaccaatcaaa |
200 |
Q |
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| T |
21817542 |
gaaaaaaaa-cattcttgttagtattttcacgtgtttttccacagaaaaagtctcctcacatttcatgctttgagac----atatacagaaccaatcaaa |
21817636 |
T |
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| Q |
201 |
aatccattttcatcaagtttatacacatcttgggtttcat |
240 |
Q |
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| T |
21817637 |
aatccattttcatcaagtttatacacatcttggatttcat |
21817676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 18336860 - 18336944
Alignment:
| Q |
2 |
ttgtaaagtggctttaatgtgtaacggattgattttaatttccaatggattgagttggcatatatagaagaacatttttccacttt |
87 |
Q |
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| T |
18336860 |
ttgtaaagtggctttaatgtgtaactgattgattttaatttgcaacggattga-ttggcatatatagaaaaacatttttccacttt |
18336944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 14923326 - 14923404
Alignment:
| Q |
162 |
tttcatgctttgagacatatatatacagaaccaatcaaaaatccattttcatcaagtttatacacatcttgggtttcat |
240 |
Q |
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||||||||||| ||||||||| ||||| ||||||| |||||| |||||||||||| | || ||||||||||||||||| |
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| T |
14923326 |
tttcatgcttttagacatatacatacataaccaatacaaaatcaattttcatcaagctaatgcacatcttgggtttcat |
14923404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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