View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5211_high_4 (Length: 227)
Name: NF5211_high_4
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5211_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 591993 - 592212
Alignment:
| Q |
5 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcgtgtcttcctctgatttgtcggc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
591993 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgttctctgatttgtcggc |
592092 |
T |
|
| Q |
105 |
actttttcgtgaaaatatgatgtttacaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagaga |
204 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
592093 |
actttttcgtgaagatatgatgtttgcaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagaga |
592192 |
T |
|
| Q |
205 |
acactgattggaagcattcc |
224 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
592193 |
acactgattggaagcattcc |
592212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 580434 - 580212
Alignment:
| Q |
5 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcgtgtcttcctctgatttgtcggc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
580434 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcactgcagcatgtcgtcctctgatttgtcggc |
580335 |
T |
|
| Q |
105 |
actttttcgtgaaaatatgatgtttacaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggcatgggaagaga |
204 |
Q |
| |
|
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
580334 |
aatttttcgtgaagatatgatgtttgcaaatatttcagcaagctttttacgtgcgttgtcacggcgcctgtgagccggaattggcaggtatgggaagaga |
580235 |
T |
|
| Q |
205 |
acactgattggaagcattccgtt |
227 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
580234 |
acactgattggaagcattccgtt |
580212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 37434221 - 37434150
Alignment:
| Q |
5 |
caatgaggagtcctgtgacttcagattctgttgttgggcgaccgtctttgtattttgagtcaatgaagcact |
76 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
37434221 |
caatgaggagtcctgtgacttcagcttcggttgtaaggcggttgtctttgtattttgagtcaatgaagcact |
37434150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University