View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5211_low_2 (Length: 426)
Name: NF5211_low_2
Description: NF5211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5211_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Original strand, 24755273 - 24755671
Alignment:
| Q |
20 |
tttgaccgcagccatattggaaggtgaagaatcatccgatttaacaaactcatcatcctttgagttcttctcagctagggactcgccatttgaaatacca |
119 |
Q |
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| T |
24755273 |
tttgaccgcagccatattggaaggtgaagaatcatccgatttaacaaactcatcatcctttgagttcttctcagctagggactcgccatttgaaataaca |
24755372 |
T |
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| Q |
120 |
ccagggttcccactctcaagacatgattccttcgcagacatgacttcagaagcaattggtcgagcagctgatgggtgtgaattatactctccaccatcac |
219 |
Q |
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| T |
24755373 |
ccagggttcccactctcaagacatgattccttcgcagacatgacttcagaagcaattggtcgagcagctgatgtgtgtgaattatactctccaccatcac |
24755472 |
T |
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| Q |
220 |
ttcctttctcatttttggacttcaaatcatcatttcctaacattttcatagaatcaatcaaactatcatcaactaaaaccaatctaatcaatataaacca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24755473 |
ttcctttctcatttttggacttcaaatcatcatttcctaacattttcatagaatcaatcaaactatcatcaactaaaaccaatctaatcaatataaacca |
24755572 |
T |
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| Q |
320 |
aaattcccaataaaaataatacaaagcaagaactattaacatatacccatcaacccaaattaaccaaaaagacccaaaacaaaattgaatgagaataat |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24755573 |
aaattcccaataaaaataatacaaagcaagaactattaacatatacccatcaacccaaattaaccaaaaagacccaaaacaaaattgaatgagaataat |
24755671 |
T |
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