View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5212-Insertion-15 (Length: 521)

Name: NF5212-Insertion-15
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5212-Insertion-15
NF5212-Insertion-15
[»] chr3 (9 HSPs)
chr3 (161-521)||(46954989-46955349)
chr3 (277-416)||(46950777-46950916)
chr3 (327-495)||(46958008-46958176)
chr3 (8-90)||(46954836-46954918)
chr3 (327-415)||(46997329-46997417)
chr3 (327-412)||(47000992-47001077)
chr3 (327-414)||(46980255-46980342)
chr3 (327-415)||(46974266-46974354)
chr3 (327-415)||(46995069-46995157)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 161 - 521
Target Start/End: Original strand, 46954989 - 46955349
Alignment:
Q  161 tctaggaagctttgctaaaatttacagaagattagaaaaattgaccacagaaactgcattcataaaatcttcgtctgattctagcgcactcattgcatta 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46954989 tctaggaagctttgctaaaatttacagaagattagaaaaattgaccacagaaactgcattcataaaatcttcgtctgattctagcgcactcattgcatta 46955088  T
Q  261 ggcaaaagggacactgccaaatccatgcttcctcctccttcaaatccctcataggctgtcacgttgccatcaaatttgtttgcatatccacttagaactg 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46955089 ggcaaaagggacactgccaaatccatgcttcctcctccttcaaatccctcataggctgtcacgttgccatcaaatttgtttgcatatccacttagaactg 46955188  T
Q  361 caaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaacttgacatcaccacactgaagggatcaaaatggcgaccaagttggta 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46955189 caaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaacttgacatcaccacactgaagggatcaaaatggcgaccaagttggta 46955288  T
Q  461 gacaaccggagactctaaccactttttgagcatctctctcacctctctatcgtcatgattc 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46955289 gacaaccggagactctaaccactttttgagcatctctctcacctctctatcgtcatgattc 46955349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 277 - 416
Target Start/End: Original strand, 46950777 - 46950916
Alignment:
Q  277 ccaaatccatgcttcctcctccttcaaatccctcataggctgtcacgttgccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccat 376  Q
    ||||||||||||| ||||||||||||  ||||||||| |||||||| || |||||| ||||||||||||| ||||| | |||||| || | |||||||||    
T  46950777 ccaaatccatgctccctcctccttcatgtccctcatatgctgtcacattcccatcacatttgtttgcataaccactcaaaactgccactggttttcccat 46950876  T
Q  377 tccaaattcatttccatacatattgaaccttggtgaactt 416  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  46950877 tccaaattcatttccatacatattaaaccttggtgaactt 46950916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 327 - 495
Target Start/End: Original strand, 46958008 - 46958176
Alignment:
Q  327 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaacttgacatcacca 426  Q
    |||||||||||||||||||||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||     |    
T  46958008 ccatcaaatttgtttgcatatccactcagaactgccatcgctttacccattccaaattcattcccatacatattgaaccttggcgaactagacactgtga 46958107  T
Q  427 cactgaagggatcaaaatggcgaccaagttggtagacaaccggagactctaaccactttttgagcatct 495  Q
     |||   ||||||||| |||||||| |||||||| ||||| |||||||||||||||| ||| |||||||    
T  46958108 tactttggggatcaaagtggcgaccgagttggtatacaacaggagactctaaccactctttcagcatct 46958176  T

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Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 46954836 - 46954918
Alignment:
Q  8 ggggggtgtctggagcagaaacggatcaatactccaggaccacctctccttctaaaactttaaaacattaagtatatgagtta 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46954836 ggggggtgtctggagcagaaacggatcaatactccaggaccacctctccttctaaaactttaaaacgttaagtatatgagtta 46954918  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 46997329 - 46997417
Alignment:
Q  327 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 415  Q
    |||||||||||||| ||||||||||||  |||||| |  ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46997329 ccatcaaatttgttagcatatccacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaacctcggtgaact 46997417  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 412
Target Start/End: Original strand, 47000992 - 47001077
Alignment:
Q  327 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtga 412  Q
    |||||||||||||| ||||||| ||||  |||||| |  ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  47000992 ccatcaaatttgttagcatatcaacttctaactgccaatgcttttcccattccaaattcattcccatacatattaaaccttggtga 47001077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 414
Target Start/End: Original strand, 46980255 - 46980342
Alignment:
Q  327 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaac 414  Q
    |||||||||||||| ||||||||||||  |||||| |  |||||||||||||| ||||||||||||||| |||| ||||| |||||||    
T  46980255 ccatcaaatttgttagcatatccacttctaactgccaaagcttttcccattccgaattcatttccatacgtattaaacctcggtgaac 46980342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 46974266 - 46974354
Alignment:
Q  327 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 415  Q
    ||||||||||| || ||||||||||||  |||||| |   |||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  46974266 ccatcaaatttattagcatatccacttctaactgccaaaacttttcccattccaaattcattcccatacatattaaacctcggtgaact 46974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 415
Target Start/End: Original strand, 46995069 - 46995157
Alignment:
Q  327 ccatcaaatttgtttgcatatccacttagaactgcaaccgcttttcccattccaaattcatttccatacatattgaaccttggtgaact 415  Q
    |||||||| ||||| ||||||||||||  |||| | |  ||||||||||||||||||||| | ||||||||||| ||||||||||||||    
T  46995069 ccatcaaacttgttagcatatccacttctaactcccaaagcttttcccattccaaattcactcccatacatattaaaccttggtgaact 46995157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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