View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5212-Insertion-17 (Length: 459)
Name: NF5212-Insertion-17
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-17 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0140 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 22 - 459
Target Start/End: Original strand, 35051567 - 35052017
Alignment:
| Q |
22 |
accattacaaacttgatttatttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcatt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35051567 |
accattacaaacttgatttatttcattaataacaagtgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgacgtcatt |
35051666 |
T |
|
| Q |
122 |
gctaacaaatggccaatattattttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35051667 |
gctaacaaatggccaatattattttcttgtcttctaatgaaacttttcttaaagttttggtaggttctaactgaagtttttcaaatatcaataattgcgt |
35051766 |
T |
|
| Q |
222 |
caaacatgaaattgatgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagttcgatagacac-----atagacc--------catactg |
308 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||| |
|
|
| T |
35051767 |
caaacttgaaattggtgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagtttgatagacaccttatatagacccacattgtcaaactg |
35051866 |
T |
|
| Q |
309 |
tcaaaccattttatcacttcctttaagcctcgtgcctccgcttcgtgtggttatggtaatccaaagaaccaagttgtttttacctttattaactctccta |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35051867 |
tcaaaccattttatcacttcctttaagccttgtgcctccgcttcgtgtggttatggtaatccaaagaaccaagttgtttttacctttatgaactctccta |
35051966 |
T |
|
| Q |
409 |
ggcatcctcagatgcacatgcttattttataacacccttgtttcttgaaga |
459 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35051967 |
gacatcctcagatgcacatgcttattttataacacccttgttccttgaaga |
35052017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 294
Target Start/End: Original strand, 36526229 - 36526459
Alignment:
| Q |
64 |
aatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaa |
163 |
Q |
| |
|
||||||||||| |||| |||| ||| |||||||||||||| ||||||| | | |||||||| ||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
36526229 |
aatacaagatgacatataatcatgaactcgggaactagcataagataatgacgcccgagctaacaagtgggcaacattatttgtttgtctcctaatgaaa |
36526328 |
T |
|
| Q |
164 |
cttgtcttaaagttttggtaggttc-taactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttgagtctcctagttatgttgtca |
262 |
Q |
| |
|
||| ||||||||||||| | | ||| ||| ||||||||| || ||| | ||| |||||||||||| ||||| || ||| | |||| ||| |||| |
|
|
| T |
36526329 |
cttatcttaaagttttgat-gattcataagtgaagttttgcaagtattgagaatcgcgccaaacatggaattggtgctgaagttgctagagatgccgtca |
36526427 |
T |
|
| Q |
263 |
accacttgcttgtaatcaagttcgatagacac |
294 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
36526428 |
accacttgcttgcaatcaagttcgatagacac |
36526459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 37923567 - 37923683
Alignment:
| Q |
64 |
aatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaa |
163 |
Q |
| |
|
|||||||||||| |||| |||| || ||||||||||||||| ||||||| | | | ||||||| ||| ||| ||||||| |||||| ||||||||| |
|
|
| T |
37923567 |
aatacaagatggcatataatcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtctcctaatgaaa |
37923666 |
T |
|
| Q |
164 |
cttgtcttaaagttttg |
180 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
37923667 |
cttatcttaaagttttg |
37923683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 41 - 273
Target Start/End: Complemental strand, 8237476 - 8237247
Alignment:
| Q |
41 |
atttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatat |
140 |
Q |
| |
|
||||||||| | | ||| ||||||||| |||||| |||| ||| ||| ||||||| | ||||| ||| || ||| | |||||||| | | |||||| |
|
|
| T |
8237476 |
atttcattactgagaacagtctcaatagaagatgatatatggtcatgaacatgggaaccaacataagatattgtcgtcctagctaacaagtcggcaatat |
8237377 |
T |
|
| Q |
141 |
tattttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgtt |
240 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||| |||||||| |||||| ||||||||| |||| | || ||| || ||||||| |||||| | || |
|
|
| T |
8237376 |
tatttgcttgtc--ctaatgaaacttatcttaaaattttggtaaattctaagtgaagttttcaaaat-tgaaaaatagctccaaacacaaaattggtatt |
8237280 |
T |
|
| Q |
241 |
gagtctcctagttatgttgtcaaccacttgctt |
273 |
Q |
| |
|
| ||||||||| ||| ||| |||||||||||| |
|
|
| T |
8237279 |
gggtctcctagatattgtgtgaaccacttgctt |
8237247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 41 - 459
Target Start/End: Complemental strand, 19920955 - 19920532
Alignment:
| Q |
41 |
atttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatat |
140 |
Q |
| |
|
|||||||| || | ||| || |||||||||||||| |||| |||| ||||||||||||| | |||| ||||||| ||| ||||||||||||||| || | |
|
|
| T |
19920955 |
atttcattcattagaacagtatcaatacaagatggcatataatcatgaatgtgggaactggtataagataatgacgtccttgctaacaaatggcaaacac |
19920856 |
T |
|
| Q |
141 |
tattttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgtt |
240 |
Q |
| |
|
||||| ||||| | |||||||||| | |||||||||||| ||| |||||| ||| ||||| |||||||| | || || || ||| || |||||||||| |
|
|
| T |
19920855 |
tatttgcttgtttcctaatgaaacctagcttaaagttttgatagattctaagtgatgttttgcaaatatcattgatagcaccgaacgtggaattgatgtt |
19920756 |
T |
|
| Q |
241 |
gagtctcctagttatgttgtcaaccacttgcttgtaatcaagttcgatagacac-----atagacccatactgtcaaaccattttatcacttcctttaag |
335 |
Q |
| |
|
|||||| |||||||||| || ||||| ||||||| |||||||||| |||||||| |||||| ||||| |||| | |||||||||||||||||||| |
|
|
| T |
19920755 |
gagtcttctagttatgtagtgaaccatttgcttgcaatcaagttcaatagacaccttagatagactcatacaatcaagcaattttatcacttcctttaag |
19920656 |
T |
|
| Q |
336 |
cctcgtgcctccgcttcgtgtggttatggtaatccaaagaaccaagttgtttttacctttattaactctcctaggcatcctcagatgcacatgcttattt |
435 |
Q |
| |
|
|| | | |||||| ||||||||||| ||||||| | |||||||||||| ||||| ||||||| ||||||| ||||| |||| ||||||||| | | ||| |
|
|
| T |
19920655 |
ccccttacctccgtttcgtgtggttgtggtaattcgaagaaccaagttatttttgcctttatgaactctcttaggctacctctgatgcacattccttttt |
19920556 |
T |
|
| Q |
436 |
tataacacccttgtttcttgaaga |
459 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
19920555 |
cgcaacacccttgttccttgaaga |
19920532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 173 - 402
Target Start/End: Original strand, 24588614 - 24588848
Alignment:
| Q |
173 |
aagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttgagtctcctagttatgttgtcaaccacttgct |
272 |
Q |
| |
|
|||||||| ||| |||||| ||||| ||| ||||||||| ||| |||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
24588614 |
aagttttgttagattctaagtgaagctttacaaatatcaagaatagcgccaaacatggaattggtgttgagtcccctagttatgtcgtcaaccacttgct |
24588713 |
T |
|
| Q |
273 |
tgtaatcaagttcgatagacac-----atagacccatactgtcaaaccattttatcacttcctttaagcctcgtgcctccgcttcgtgtggttatggtaa |
367 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| || | ||| ||||||||| | || |||| | || ||||||||||||||||||| ||||| |
|
|
| T |
24588714 |
tgcaatcaagttcgatagacaccttagatagacccgtatttccaagccattttattgcctcttttagtcatctagcctccgcttcgtgtggttgtggtat |
24588813 |
T |
|
| Q |
368 |
tccaaagaaccaagttgtttttacctttattaact |
402 |
Q |
| |
|
||| |||||||||| || |||| ||||||| |||| |
|
|
| T |
24588814 |
tcctaagaaccaagctgattttgcctttatgaact |
24588848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 156 - 403
Target Start/End: Complemental strand, 8295151 - 8294899
Alignment:
| Q |
156 |
taatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttgagtctcctagttat |
255 |
Q |
| |
|
|||| |||||| |||||||||||||| || |||||| ||||| ||| ||||||||| || ||||||||||||||||||||||||||| || || ||| |
|
|
| T |
8295151 |
taataaaacttatcttaaagttttggcagattctaagtgaagctttgcaaatatcaagaacaacgccaaacatgaaattgatgttgagtccccaagctat |
8295052 |
T |
|
| Q |
256 |
gttgtcaaccacttgcttgtaatcaagttcgatagacac-----atagacccatactgtcaaaccattttatcacttcctttaagcctcgtgcctccgct |
350 |
Q |
| |
|
| || || |||||||||| ||||||||||||||||||| |||||| |||||| ||| |||||||||| | || |||| || | ||||||||| |
|
|
| T |
8295051 |
gccgtaaatcacttgcttgcaatcaagttcgatagacaccttagatagactcatacttccaagccattttatcgcctcttttagtcccctagcctccgct |
8294952 |
T |
|
| Q |
351 |
tcgtgtggttatggtaatccaaagaaccaagttgtttttacctttattaactc |
403 |
Q |
| |
|
|||||||||| |||| ||| |||||||||| || |||| ||||||| ||||| |
|
|
| T |
8294951 |
tcgtgtggttgtggttctcctaagaaccaaggtggttttgcctttatgaactc |
8294899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 149 - 389
Target Start/End: Original strand, 9227250 - 9227495
Alignment:
| Q |
149 |
tgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttgagtctcc |
248 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||| |||||| ||||||||| ||||| ||||||| ||| |||||||||||||| | |||||||| | |
|
|
| T |
9227250 |
tgtcttcctatgaaacttatcttaaagttttgatagattctaaatgaagttttacaaatagcaataatagcgtcaaacatgaaattg-tattgagtcttc |
9227348 |
T |
|
| Q |
249 |
tagttatgttgtcaaccac--ttgcttgtaatcaagttcgatagacac-----atagacccatactgtcaaaccattttatcacttcctttaagcctcgt |
341 |
Q |
| |
|
||||| || || | ||| ||||||| ||||||||||||||||||| |||||||||||||| | || ||||||||| ||||||| |||| | | |
|
|
| T |
9227349 |
tagttgtgccttccagcacatttgcttgcaatcaagttcgatagacaccttatatagacccatactgcctaatcattttatcgcttcctt-aagctactt |
9227447 |
T |
|
| Q |
342 |
gcctccgcttcgtgtggttatggtaatccaaagaaccaagttgttttt |
389 |
Q |
| |
|
|||||||||| ||| |||| ||||||||| ||||||||| |||||||| |
|
|
| T |
9227448 |
gcctccgctttgtggggttgtggtaatccgaagaaccaaattgttttt |
9227495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 13923064 - 13922912
Alignment:
| Q |
142 |
attttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttg |
241 |
Q |
| |
|
|||| ||||| | |||||||||||| ||||||||||||||||| |||||| ||||| ||| |||||| || || ||| |||||| | || ||||| |
|
|
| T |
13923064 |
atttgcttgtttcctaatgaaacttatcttaaagttttggtagattctaagtgaagctttacaaatataaagaacaacgcaaaacatcgagttagtgttg |
13922965 |
T |
|
| Q |
242 |
agtctcctagttatgttg-tcaaccacttgcttgtaatcaagttcgatagaca |
293 |
Q |
| |
|
|||||||||| |||| | |||||||||| |||| |||||||||||||||||| |
|
|
| T |
13922964 |
agtctcctaggaatgtggttcaaccacttacttgaaatcaagttcgatagaca |
13922912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 37490999 - 37490918
Alignment:
| Q |
99 |
tagcataaaataatgatgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaacttgtcttaaagttttg |
180 |
Q |
| |
|
|||||| | ||||||| ||| | |||||||| ||| ||| ||||||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
37490999 |
tagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagttttg |
37490918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 174 - 459
Target Start/End: Complemental strand, 43381919 - 43381628
Alignment:
| Q |
174 |
agttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttgagtctcctagttatgttgtcaaccacttgctt |
273 |
Q |
| |
|
||||||| |||||| ||| ||||||| || ||||||||||||| ||| |||||||| ||||| ||||||||||| || |||| ||||||||||||||| |
|
|
| T |
43381919 |
agttttgataggttttaagtgaagttgttcaaatatcaataatagcgtcaaacatggaattggtgttgagtctcttaattataccgtcaaccacttgctt |
43381820 |
T |
|
| Q |
274 |
gtaatcaagttcgatagacac-----atagacccatactgtcaaaccattttatcacttcctttaagcctcgtgcctccgcttcgtgtggttatggtaat |
368 |
Q |
| |
|
| ||||||||||||||||||| ||||||| ||| |||||| || |||||| ||||||||||| | | |||||||||||||||||||| ||||| |
|
|
| T |
43381819 |
gcaatcaagttcgatagacactttagatagacctatattgtcaagtcactttatcgcttcctttaagtcccttgcctccgcttcgtgtggttgctgtaat |
43381720 |
T |
|
| Q |
369 |
ccaaagaaccaagttgtttttacctttattaactctcctaggcatcctcagatgcacatgcttattttat-aacacccttgtttcttgaaga |
459 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||||||||| | ||||| | |||||||| |||| || ||||| |||||| |||||||| |
|
|
| T |
43381719 |
ccaaagaaccaagttatttttgcctttatgaactctcctagacttcctctaacgcacatgcatattccataaacactcttgttccttgaaga |
43381628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 43382035 - 43381944
Alignment:
| Q |
41 |
atttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatg |
132 |
Q |
| |
|
||||||| ||||| || |||||| |||||||| |||||| |||| |||||||| ||||||||||| ||||||| ||| ||| ||||||||| |
|
|
| T |
43382035 |
atttcatcaataattacagtctcagtacaagatagaatatgatcatgaatgtggaaactagcataagataatgacgtccttgttaacaaatg |
43381944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 39079784 - 39079711
Alignment:
| Q |
41 |
atttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatga |
114 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| | |||| |||| |||| || ||||||||||| ||||||| |
|
|
| T |
39079784 |
atttcattaataataacggtctcaatacaagatagtatatgatcatgaatttgaaaactagcataagataatga |
39079711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 28 - 459
Target Start/End: Complemental strand, 41652874 - 41652436
Alignment:
| Q |
28 |
acaaacttgatttatttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaac |
127 |
Q |
| |
|
|||||||| | | |||| |||||||| || |||||||||||| ||| ||||| |||| | ||| ||||||| | || ||||| ||||| |||||| | |
|
|
| T |
41652874 |
acaaacttaactcattttattaataataagagtctcaatacaaaatgaaatatgatcataaccgtgagaactagtacaagataattatgtccttgctagc |
41652775 |
T |
|
| Q |
128 |
aaatggccaatattat--tttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaa |
225 |
Q |
| |
|
|||||| ||||| ||| || ||||| | | ||||||| || |||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
41652774 |
aaatggacaatactataattgcttgtttccgaatgaaatttatcttaaagttttggtaggttctaagtgaagttttgcaaatatcaataatagcgccaaa |
41652675 |
T |
|
| Q |
226 |
catgaaattgatgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagttcgatagacac-----atagacccatactgtcaaaccatttt |
320 |
Q |
| |
|
||| || | |||||||||||||||||| | ||||||||| | |||| |||||||||||||| |||| ||| || ||| |||||| |||||| |
|
|
| T |
41652674 |
cattgaactagtgttgagtctcctagttaagccgtcaaccacatacttgcaatcaagttcgataaacaccttagataaacatatattgtcaagtcatttt |
41652575 |
T |
|
| Q |
321 |
atcacttcctttaagcctcgtgcctccgcttcgtgtggttatggtaatccaaagaaccaagttgtttttacctttattaactctcctaggcatcctcaga |
420 |
Q |
| |
|
|| |||| ||| ||| | ||||||||||| ||||| || |||||||| |||||||||||||| |||| ||||||| ||||||| || || || | || |
|
|
| T |
41652574 |
attgcttcttttcagctccttgcctccgctttgtgtgcttgtggtaatcaaaagaaccaagttggttttgcctttatgaactctcatacgcttcatatga |
41652475 |
T |
|
| Q |
421 |
tgcacatgcttattttataacacccttgtttcttgaaga |
459 |
Q |
| |
|
|| |||||| |||| |||||| ||||||| |||||||| |
|
|
| T |
41652474 |
tgtacatgcatattccataacatccttgttccttgaaga |
41652436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 28 - 323
Target Start/End: Complemental strand, 26917559 - 26917259
Alignment:
| Q |
28 |
acaaacttgatttatttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaac |
127 |
Q |
| |
|
|||||||| | | ||||||||||||| ||| |||||||| |||||||| |||| |||| ||| |||| || ||||||| ||||||| | | |||||| |
|
|
| T |
26917559 |
acaaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaacatggggacaagcataagataatgacgcccttgctagt |
26917460 |
T |
|
| Q |
128 |
aaatggccaatattattttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaaca |
227 |
Q |
| |
|
| |||| ||| | ||||| ||||||| ||||| |||||| |||||||||||| |||| |||||| ||||| ||| ||||||||| ||| ||| |||||| |
|
|
| T |
26917459 |
agatgggcaacactatttgcttgtctcctaataaaacttatcttaaagtttttgtagattctaagtgaagctttgcaaatatcaagaatagcgtcaaaca |
26917360 |
T |
|
| Q |
228 |
tgaaattgatgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagttcgatagac-----acatagacccatactgtcaaaccattttat |
322 |
Q |
| |
|
| ||||| ||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
26917359 |
ttgaattgttgttgagtcccctagctatgccgtcaaccacttgcttgcaatcaagttcgatagacatcttagatagacccatacttccaaaccattttat |
26917260 |
T |
|
| Q |
323 |
c |
323 |
Q |
| |
|
| |
|
|
| T |
26917259 |
c |
26917259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 23270194 - 23270078
Alignment:
| Q |
64 |
aatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaa |
163 |
Q |
| |
|
|||||||||||| |||| |||| ||| ||||||||||||||| ||||||| | | |||||||| || ||| ||||||| ||||||||||||||||| |
|
|
| T |
23270194 |
aatacaagatggcatataatcatgaacttgggaactagcataagataatgactccctagctaacaagtgagcaacattatttgcttgtcttctaatgaaa |
23270095 |
T |
|
| Q |
164 |
cttgtcttaaagttttg |
180 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
23270094 |
cttatcttaaagttttg |
23270078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 294
Target Start/End: Original strand, 39007278 - 39007431
Alignment:
| Q |
141 |
tattttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgtt |
240 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||| ||| ||||| |||||| ||||| | | ||||||||| ||| | ||||||||||||||| ||| |
|
|
| T |
39007278 |
tattttcttgttttctaataaaacttggcttaaaatttaggtagattctaagtgaagctctacaaatatcaagaatagggccaaacatgaaatttgtgtc |
39007377 |
T |
|
| Q |
241 |
gagtctcctagttatgttgtcaaccacttgcttgtaatcaagttcgatagacac |
294 |
Q |
| |
|
|||||||||| ||| | || |||||||||||| |||||| | ||||||||| |
|
|
| T |
39007378 |
aagtctcctagctatatcgttaaccacttgcttacaatcaaagttgatagacac |
39007431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 34944358 - 34944427
Alignment:
| Q |
268 |
ttgcttgtaatcaagttcgatagaca-----catagacccatactgtcaaaccattttatcacttccttt |
332 |
Q |
| |
|
||||||| ||| |||||||||||||| |||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
34944358 |
ttgcttgcaattaagttcgatagacatcttacataaacccatattgtcaagccattttatcacttccttt |
34944427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 296
Target Start/End: Complemental strand, 5461069 - 5460808
Alignment:
| Q |
42 |
tttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatatt |
141 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| |||| |||| |||| || | |||||||||| |||||||||| | |||||||| | ||| | | |
|
|
| T |
5461069 |
tttcattaataataactatcttaatacaagatggcatatgatcatgaatttgaggactagcataagataatgatgttctagctaacaagtcagcaacaat |
5460970 |
T |
|
| Q |
142 |
attttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgttg |
241 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||| |||| | |||| ||| || | || | ||| ||||| |||||| ||||| ||||| |
|
|
| T |
5460969 |
atttgcttgtctcctaatgaaacttatcttaaagttttggtaaattctcaaggaagctttgcaagtctctagaatagcgccgaacatggaattggtgttg |
5460870 |
T |
|
| Q |
242 |
agtctcctagttatgt-------tgtcaaccacttgcttgtaatcaagttcgatagacacat |
296 |
Q |
| |
|
||| ||||| |||| ||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
5460869 |
agtttcctaacgatgttgttaggtgtcaaccacttgcttgcaatcaattttgatagacacat |
5460808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 274
Target Start/End: Original strand, 33026605 - 33026838
Alignment:
| Q |
41 |
atttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaacaaatggccaatat |
140 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||| |||| |||| ||| | ||||||||| | || ||||||||||| || || ||| ||||| |
|
|
| T |
33026605 |
atttcattaataataacagtctcaatacaagataacatatgatcatgaacgcgggaactagtaaaagataatgatgtccttattagtctatgtgcaatac |
33026704 |
T |
|
| Q |
141 |
tattttcttgtcttctaatgaaacttgtcttaaagttttggtaggttctaactgaagttttttaaatatcaataattgcgccaaacatgaaattgatgtt |
240 |
Q |
| |
|
| ||| |||||| ||||| ||||| | |||||||||||||| |||||| ||||| ||| | ||||||| ||| | |||||||||| ||||| |||| |
|
|
| T |
33026705 |
tgtttgtttgtctcctaatataacttattttaaagttttggtatattctaagtgaagctttgtggatatcaagaatagtgccaaacatggaattggtgtt |
33026804 |
T |
|
| Q |
241 |
gagtctcctagttatgttgtcaaccacttgcttg |
274 |
Q |
| |
|
||||| |||| | || |||||| |||||||||| |
|
|
| T |
33026805 |
gagtcccctatctgtggtgtcaatcacttgcttg |
33026838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 35529135 - 35529203
Alignment:
| Q |
224 |
aacatgaaattgatgttgagtctcctagttatgttgtcaaccacttgcttgtaatcaagttcgatagac |
292 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| || |||||||||||||||||||||||| |||||| |
|
|
| T |
35529135 |
aacatgaaattagtgttgagtctcctagcgatgtcgtgaaccacttgcttgtaatcaagttcaatagac |
35529203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 12093904 - 12093862
Alignment:
| Q |
295 |
atagacccatactgtcaaaccattttatcacttcctttaagcc |
337 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
12093904 |
atagacctatactgtcaaaccatttcatcgcttcctttaagcc |
12093862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 30962 - 30858
Alignment:
| Q |
28 |
acaaacttgatttatttcattaataacaactgtctcaatacaagatggaatattatcaagaatgtgggaactagcataaaataatgatgtcattgctaac |
127 |
Q |
| |
|
|||||||| | | ||||||||||| | ||| ||||||||||| ||| |||| |||| |||||||| ||||| ||||| ||||||| || |||||||| |
|
|
| T |
30962 |
acaaacttaactcatttcattaatgataacaatctcaatacaaaatgacatataatcatgaatgtggaaactaacataacataatga-gttcttgctaac |
30864 |
T |
|
| Q |
128 |
aaatgg |
133 |
Q |
| |
|
|||||| |
|
|
| T |
30863 |
aaatgg |
30858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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