View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-18 (Length: 382)
Name: NF5212-Insertion-18
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-18 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 32788726 - 32789100
Alignment:
| Q |
8 |
ttgattgcctctatcctcttgtgtgtatctgcaacaacagataatgaatttcctagatgtaattgtgatgatgagaccagtttctggactattgagagta |
107 |
Q |
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| T |
32788726 |
ttgattgcctctatcctcttgtgtgtatctgcaacaacagataatgaatttcctagatgtaattgtgatgatgagaccagtttctggactattgagagta |
32788825 |
T |
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| Q |
108 |
ttttggagtgtcaaagagttggtgatttcttgattgctgtggcctacttctcaatccctcttgagttgctttatttcgtcagttgctcgaatgtcccttt |
207 |
Q |
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| T |
32788826 |
ttttggagtgtcaaagagttggtgatttcttgattgctgtggcctacttctcaatccctcttgagctgctttattttgtcagttgctcgaacgtcccttt |
32788925 |
T |
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| Q |
208 |
caaatgggtccttgttcagttcattgcttttatagtactatgtggattgacacattttttgaatggttggacttatggtcctcacacttttcagcttatg |
307 |
Q |
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| T |
32788926 |
caaatgggtccttgttcagttcattgcttttatagtactatgtggattgacacattttttgaatggttggacttatggtcctcacacttttcagcttatg |
32789025 |
T |
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| Q |
308 |
gtggcacttaccatctttaagattctcaccgccttggtgtcttgtgcaactgcgataacgcttgtcactttgatt |
382 |
Q |
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| T |
32789026 |
gtggcacttaccatctttaagattctcaccgccttggtgtcttgtgcaactgcgataacacttgtcactttgatt |
32789100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 128 - 381
Target Start/End: Complemental strand, 16686245 - 16685992
Alignment:
| Q |
128 |
ggtgatttcttgattgctgtggcctacttctcaatccctcttgagttgctttatttcgtcagttgctcgaatgtccctttcaaatgggtccttgttcagt |
227 |
Q |
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| T |
16686245 |
ggtgattttctgatcgcggtggcatacttctcgatccctattgagcttctttatttcatcagttgtgcaaacattccattcaaatgggtactttttcagt |
16686146 |
T |
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| Q |
228 |
tcattgcttttatagtactatgtggattgacacattttttgaatggttggacttatggtcctcacacttttcagcttatggtggcacttaccatctttaa |
327 |
Q |
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| T |
16686145 |
tcattgctttcattgtactttgtggaatgacacatttgtttaatagctggacttatggaccccacacatttcaaatcatgctgacacttactgtcttgaa |
16686046 |
T |
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| Q |
328 |
gattctcaccgccttggtgtcttgtgcaactgcgataacgcttgtcactttgat |
381 |
Q |
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| T |
16686045 |
agtcctcactgcattggtttcatgtgcaactaccataaccctcatcactttgat |
16685992 |
T |
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