View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-2 (Length: 1038)
Name: NF5212-Insertion-2
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 26258979 - 26259357
Alignment:
| Q |
8 |
ctactgatccaacatttctctactttgcatatccatagaagtaaatcaagtgttaagtgttgtactacactggtgtttctgcccctaatttatatgtttt |
107 |
Q |
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| T |
26258979 |
ctactaatccaacatttctctactttgcatatccatagaagtaaatcaagtgttaagtgttgtactacac----gtttctgcccctaatttatatgtttt |
26259074 |
T |
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| Q |
108 |
tgttctactttgtgatttgagactatgatttggtattttttataatgatgtgatgatttgcacttaaaaaccaaagttccttacaatcccttacacttat |
207 |
Q |
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| T |
26259075 |
tgttctactttgtgatttgagactatgatttggtatttt-tataatgatgtgatgatttgcacttaaaaaccaaagttccttagaatcccttacacttat |
26259173 |
T |
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| Q |
208 |
aacagcctcgctcagtttcttccaactagtgttgacattatgctcgtgttgtacaaccatgctattgtggttttcctatacatcatgccaactcgatagt |
307 |
Q |
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| T |
26259174 |
aacagcctcgctcagtttcttccaactagtgttgacattatgctcgtgttgtacaaccatgctattgtggttttcctatacatcatgccaactcgatagt |
26259273 |
T |
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| Q |
308 |
atattcaaacttctcttacaaacaacagttctggttggcgttcattacgccaaataacgtcatttctttgcttccaaattgact |
391 |
Q |
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| T |
26259274 |
atattcaaacttctcttacaaacaacagttctggttggcgttcattacgccaaataacgtcatttctttgcttccaaattgact |
26259357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 560 - 665
Target Start/End: Original strand, 26259524 - 26259623
Alignment:
| Q |
560 |
atcttgtaattgcaattcctacatatcctcaataaataaaaagttagttggtttgttatatactatagatatagatatagataaaagatgtcaaaaccaa |
659 |
Q |
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| T |
26259524 |
atcttgtaattgcaattcctacatatcctcaataaataaaaagttagctggtttgttatatac------tatagatatagataaaagatgtcaaaaccaa |
26259617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 450 - 519
Target Start/End: Original strand, 26259406 - 26259475
Alignment:
| Q |
450 |
aacctttgatggatttgtagttataatcgtattatgttttatgcgatcccacaaccccacacgctacaac |
519 |
Q |
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| T |
26259406 |
aaccttcgatggatttatagctataatcgtattatgttttatgcgatcccacaaccccacacgctgcaac |
26259475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 737 - 797
Target Start/End: Original strand, 26259701 - 26259761
Alignment:
| Q |
737 |
ctgccatgaagccagatacccaagccttatctgaggcaaggtgaagaaggcggccatcctt |
797 |
Q |
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| T |
26259701 |
ctgccaagaagccagatacccaagccttatctgaggtaaggtgaagaaggcgaccgtcctt |
26259761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 896 - 952
Target Start/End: Original strand, 26259864 - 26259922
Alignment:
| Q |
896 |
aaaatatattaaaggtttagttctttgtt-gcccatttagaa-ttatcacgtgatgtca |
952 |
Q |
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| T |
26259864 |
aaaatatattaaaggtttagttctttgttggcccatttagaatttatcacgtgatgtca |
26259922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 11 - 173
Target Start/End: Original strand, 14246614 - 14246792
Alignment:
| Q |
11 |
ctgatccaacatttctctactttgcatatccatagaagtaaatcaagtgttaagtgttgtactacactggtgtttctgcccctaatttat-atgtttttg |
109 |
Q |
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| T |
14246614 |
ctgatccaacgtttctctacttcgcttatgctttgaaggaaatcaagtgttaagtgttgtactactctagtttttctg-ccctaatttatcatgtttttg |
14246712 |
T |
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| Q |
110 |
ttctactttgt----------------gatttgagactatgatttggtattttttataatgatgtgatgatttgcactta |
173 |
Q |
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| T |
14246713 |
ttctacattgtgttctaagttactcgagagttgagactatgatttggtatttttgataatgatgtgataatttgcactta |
14246792 |
T |
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