View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-3 (Length: 1030)
Name: NF5212-Insertion-3
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-3 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0242 (4 HSPs) |
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| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 473 - 1030
Target Start/End: Original strand, 6912472 - 6913030
Alignment:
| Q |
473 |
catgaatacaaagttcccctgtaatagcatgtgtcataccagtattataccactatagcattaacatgagccacttggtttcaagactccattcaaggtt |
572 |
Q |
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| T |
6912472 |
catgaatacaaagttcccctgtaatagcatgtgtcataccagtactataccactatagcattaacatgagccacttggtttcaagactccattcaaggtt |
6912571 |
T |
|
| Q |
573 |
cattagcatctactcaactcagtgcagataatcacgaagatagatgttgagaaagtaaataaaatgttgtgggaatgtaaacaagatatgaaaaatatta |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6912572 |
cattagcatctactcaactcagtgcagataatcacgaagatagatgttgagaaagtgaataaaatgttgtgggaatgtaaacaagatatgaaaaatatta |
6912671 |
T |
|
| Q |
673 |
atatcattcaggatcagcatatcacccaattattaatactgaagtctataatgcttatataccttagccaaagtgttatcatnnnnnnnnnnnccaacat |
772 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6912672 |
atatcattcaggatcagcatatcacccaattattaatactgaagtctataatgcttatataccttagccaaagtgttatcat-aaaaaaaaaaccaacat |
6912770 |
T |
|
| Q |
773 |
tcaagttctttatcattttcttgaacttttttaacttgtttacaacctaggtactcttgtaaactacgcataacaacctaaatattactatcagatagaa |
872 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6912771 |
tcaagttctttatcattttcttgaacttttttaacttgtttacaacctaggtactcttgtaaactacgcataacaacctaaatattactatcagatagaa |
6912870 |
T |
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| Q |
873 |
gaaatttatgcatggagtttacttaaaggtagagcatatgaaatactcaaacatcggaacatacgtttaggaattgtgccttttg-ctcaagcaactcac |
971 |
Q |
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| T |
6912871 |
gaaatttatgcatggagtttacttaaaggtagagcatatgaaatactcaaacatcggaacatacgtttaggaattgtgccttttgcctcaagcaactcac |
6912970 |
T |
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| Q |
972 |
tatgagctttagctgcttcaattttaa-ttttgaaacaagagcatcatattctgaaattg |
1030 |
Q |
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| T |
6912971 |
tatgagctttagctgcttcaattttaatttttgaaacaagagcatcatattctgaaattg |
6913030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 458
Target Start/End: Original strand, 6911940 - 6912390
Alignment:
| Q |
8 |
ttcacatctgaatgttgatacgtattagtaaacatgctagagcctaaatctcaaaggtatcattcacagaagttaagctaaattgtttctagaattacct |
107 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6911940 |
ttcacatctgaatgttgatacatattagtaaacatgctagagcctaaatctcaaaggtatcattcacagaagttaagctaaattgtttctagaattacct |
6912039 |
T |
|
| Q |
108 |
tgtaacaagaaagcatattcaccattatagctttttaatttccagaatgcattaccactattatccaagtactcaggctcaattctcactgcatcacagc |
207 |
Q |
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| T |
6912040 |
tgtaacaagaaagcatattcaccattatagctttttaatttccagaatgcattaccactattatccaagtactcaggctcaattctcactgcatcacagc |
6912139 |
T |
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| Q |
208 |
attggttccctgcaatgttataaggnnnnnnnntgtcaaccattgcaatagcagaacattgaactcttacaaaacaaagagtgaccatatacttgcatat |
307 |
Q |
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| T |
6912140 |
attggttccctgcaatgttataaggaaaaaaaatgtcaaccattgcaatagcagaacattgaactcttacaaaacaaagagtgaccatatacttgcatat |
6912239 |
T |
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| Q |
308 |
tcaagtgcatttgtttggtttaccaaataaattctagtttggatgttaaagaaatatctactgatgcaacaatcatattcttcataagaaattggcaaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6912240 |
tcaagtgcatttgtttggtttaccaaataaattctagtttggatgttaaagaaatatctactgatgcaacaatcatattcttcataagaaattggcaaat |
6912339 |
T |
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| Q |
408 |
ttaaaccaactgaatttaaacaaattggatgtttattttcgatcaataaac |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6912340 |
ttaaaccaactgaatttaaacaaattggatgtttattttcgatcaataaac |
6912390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 114; Significance: 3e-57; HSPs: 4)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 15584 - 15717
Alignment:
| Q |
98 |
agaattaccttgtaacaagaaagcatattcaccattatagctttttaatttccagaatgcattaccactattatccaagtactcaggctcaattctcact |
197 |
Q |
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| T |
15584 |
agaattaccttgtaactagaaagcatattcaccattgtagctttttaatttccggaatgcattaccactgttatccaagtactcaggctcaattctcatt |
15683 |
T |
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| Q |
198 |
gcatcacagcattggttccctgcaatgttataag |
231 |
Q |
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| T |
15684 |
gcatcacagcattggttccctgcaatgttataag |
15717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 24419 - 24552
Alignment:
| Q |
98 |
agaattaccttgtaacaagaaagcatattcaccattatagctttttaatttccagaatgcattaccactattatccaagtactcaggctcaattctcact |
197 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
24419 |
agaattaccttgtaactagaaagcatattcaccattgtagctttttaatttccggaatgcattaccactgttatccaagtactcaggctcaattctcatt |
24518 |
T |
|
| Q |
198 |
gcatcacagcattggttccctgcaatgttataag |
231 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24519 |
gcatcacagcattggttccctgcaatgttataag |
24552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 15521 - 15571
Alignment:
| Q |
8 |
ttcacatctgaatgttgatacgtattagtaaacatgctagagcctaaatct |
58 |
Q |
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|||| ||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
15521 |
ttcaaatctgtatgttgatatgtattagtaaacatgctagagcctaaatct |
15571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24356 - 24406
Alignment:
| Q |
8 |
ttcacatctgaatgttgatacgtattagtaaacatgctagagcctaaatct |
58 |
Q |
| |
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|||| ||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
24356 |
ttcaaatctgtatgttgatatgtattagtaaacatgctagagcctaaatct |
24406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 88; Significance: 9e-42; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 158053 - 157835
Alignment:
| Q |
8 |
ttcacatctgaatgttgatacgtattagtaaacatgctagagcctaaatctcaaaggtatcattcacagaagttaagctaaattgtttctagaattacct |
107 |
Q |
| |
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|||| ||||| ||||||||| |||||||||||||||||| ||| | |||||||| ||||||||| ||| |||||||||||| || || |||||||||| |
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| T |
158053 |
ttcaaatctgtatgttgatatgtattagtaaacatgctatagcttgaatctcaatggtatcattgacaaaagttaagctaattttgttg-agaattacct |
157955 |
T |
|
| Q |
108 |
tgtaacaagaaagcatattcaccattatagctttttaatttccagaatgcattaccactattatccaagtactcaggctcaattctcactgcatcacagc |
207 |
Q |
| |
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||||||| || ||||||||| ||||| ||||| ||||||||||||||| |||||| | |||||||||| ||||||||||||||||||| |||||| |
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| T |
157954 |
tgtaacataaaggcatattcatcattacagcttcttaatttccagaatgtcttaccattgctatccaagtattcaggctcaattctcactgtatcacaat |
157855 |
T |
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| Q |
208 |
attggttccctgcaatgtta |
227 |
Q |
| |
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||||||||||||||||| |
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| T |
157854 |
gccggttccctgcaatgtta |
157835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 773 - 1030
Target Start/End: Complemental strand, 156787 - 156521
Alignment:
| Q |
773 |
tcaagttctttatcattttcttgaact-tttttaacttgtttacaacctaggtactcttgtaaactacgcataacaacctaaatattact----atcaga |
867 |
Q |
| |
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|||| |||||| |||||||||||| || ||||| ||||||||||||| |||||| || | | || ||| ||||||| |||||||||| |||||| |
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| T |
156787 |
tcaaattctttttcattttcttgagctattttttacttgtttacaacttaggtagtcctttcaattacaagcaacaacccaaatattactcagaatcaga |
156688 |
T |
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| Q |
868 |
tagaagaaatttatgcatggagtttacttaaaggtagagcatatgaaatactca--aacatcggaacatacgtttaggaattgtgccttttg-ctcaagc |
964 |
Q |
| |
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| |||||||||||||||| |||| | | |||| ||||| |||||| | ||||| |||||| ||| |||||||||||||||||||||||| ||||| | |
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| T |
156687 |
ttaaagaaatttatgcatgaagttgattaaaagttagaggatatgagaaactcataaacatcacaacgtacgtttaggaattgtgccttttgcctcaatc |
156588 |
T |
|
| Q |
965 |
aactcactatgagctttagctgcttcaattttaat-tttgaaacaagagcatcatattctgaaattg |
1030 |
Q |
| |
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|||||| |||||||||||| ||||||| |||| || |||| || ||||||||||| ||||||||||| |
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| T |
156587 |
aactcagtatgagctttagttgcttcactttttatctttgcaagaagagcatcatgttctgaaattg |
156521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 645 - 733
Target Start/End: Complemental strand, 156923 - 156835
Alignment:
| Q |
645 |
gaatgtaaacaagatatgaaaaatattaatatcattcaggatcagcatatcacccaattattaatactgaagtctataatgcttatata |
733 |
Q |
| |
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||||||||||||||| ||||||||| |||| |||||| ||||||||||||| |||||| | |||| || ||| |||||||||||| |
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| T |
156923 |
gaatgtaaacaagatgtgaaaaataataattgcattcaagatcagcatatcatgcaattacaattactagaggctacaatgcttatata |
156835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 17750806 - 17750724
Alignment:
| Q |
46 |
agagcctaaatctcaaaggtatcattcacagaagttaagctaaattgtttctagaattaccttgtaacaagaaagcatattca |
128 |
Q |
| |
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||||||||||||| || ||||||||||| || ||||||||| || || ||||||||||||||| |||| |||||||||| |
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| T |
17750806 |
agagcctaaatcttaatggtatcattcaagaaaattaagctaattttattttagaattaccttgtattaagagagcatattca |
17750724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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