View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-5 (Length: 817)
Name: NF5212-Insertion-5
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 709; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 709; E-Value: 0
Query Start/End: Original strand, 7 - 817
Target Start/End: Complemental strand, 34876078 - 34875275
Alignment:
| Q |
7 |
aattttgtgtatggcgtttggaaaatcacgatggttcactctgaatttagcaaatttactactaatacatgcattgacatcggatatgacactgatatgt |
106 |
Q |
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| T |
34876078 |
aattttgtgtatagcttttggaaaatcacgatggttcactctgaatttagcaaatttactactaatacatgcatggacatc---------actgatatgt |
34875988 |
T |
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| Q |
107 |
ggcattagaaataannnnnnnaaaattaaaggaattgaatggaatgtaatcacacgtgtttgtgaacatagacacaacttcaatctgaaatgttcgtgtt |
206 |
Q |
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| T |
34875987 |
ggcattagaaataatttttttaaaatgaaaggaattgaattgaatgtaatcacacgtgtttgtgaacatagacacaacttcaatctgaaatgttcgtgtt |
34875888 |
T |
|
| Q |
207 |
gcatagacacatactattctttttattgtgttttacttttggtaattgttacctgatgatgattttgtgatagtttaattattttagggaaatgggcacc |
306 |
Q |
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| T |
34875887 |
gcatagacacatactattctttttattgtgttttacttttggtaattgttacttgatgatgattttgtgataatttaattattttagggaaatgggcacc |
34875788 |
T |
|
| Q |
307 |
gtgttatgactgtgtcaccgcgttatgatcaatacaaggatgcatgggatactgatgtatctgttgaggtaactggtttttgttatgtttttgtatatgt |
406 |
Q |
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| T |
34875787 |
gtgttatgactgtgtcaccgcgttatgatcaatacaaggatgcatgggatactgatgtatctgttgaggtaactattttttgttatgtttttgtatatgt |
34875688 |
T |
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| Q |
407 |
ataaatcctgaaagaacttggaattattccttgttgatgatttatttacatatttcattttgttgttgtttgttgtagctcaaagttggtgatagaattg |
506 |
Q |
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| T |
34875687 |
ataaatcttgaaagaacttggaattattccttgttgatgatttatttacatatttcattttgttgttgtttgttgtagctcaaagttggtgatagaattg |
34875588 |
T |
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| Q |
507 |
aaactgtgcgattctttcactgttataagagaggagttgatcgtgtttttgtggatcacccacttttccttgaaaaggttgtatttctatgatttagttt |
606 |
Q |
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| T |
34875587 |
aaactgtgcgattctttcactgttataagagaggagttgatcgtgtttttgtggatcacccacttttccttgaaaaggttgtatttctatgatttagttt |
34875488 |
T |
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| Q |
607 |
tcatcaatcagtggaatgtttatagtcctttataggattgaatttgaatgtgt--tagagttaaactgactttatttttggcatttggaatatgaaaggt |
704 |
Q |
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| T |
34875487 |
tcatcaatcagtggaatgtttatagtcctttataggattgaatttgaatgtgttatagagttaaactgactttatttttggcatttggaatatgaaaggt |
34875388 |
T |
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| Q |
705 |
gtgggggaagaccgagtcaaaactctatggtcctaaaactggaactgattataaagataatcaacttagattcagcttgttatgtcaggtaactttttgc |
804 |
Q |
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| T |
34875387 |
gtgggggaagaccgagtcaaaactctatggtcctaaaactggaactgattataaagataatcaacttagattcagcttgttatgtcaggtaactttttgc |
34875288 |
T |
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| Q |
805 |
tttatattttcta |
817 |
Q |
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| T |
34875287 |
tttatattttcta |
34875275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 466 - 627
Target Start/End: Original strand, 25077156 - 25077317
Alignment:
| Q |
466 |
ttgttgttgtttgttgtagctcaaagttggtgatagaattgaaactgtgcgattctttcactgttataagagaggagttgatcgtgtttttgtggatcac |
565 |
Q |
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| T |
25077156 |
ttgttgttgttgttggtagatcaaagttggagttaaaattgaaactgtt-gtttctttcactgcagcaagagaggagtcgatcgtgtttttgttgataac |
25077254 |
T |
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| Q |
566 |
ccacttttccttgaaaagg-ttgtatttctatgatttagttttcatcaatcagtggaatgttt |
627 |
Q |
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| T |
25077255 |
ccacttttccttgaagtggtttgtctttgtgtgattttgttttcatcaatcaatggaatgttt |
25077317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 466 - 627
Target Start/End: Original strand, 25135125 - 25135286
Alignment:
| Q |
466 |
ttgttgttgtttgttgtagctcaaagttggtgatagaattgaaactgtgcgattctttcactgttataagagaggagttgatcgtgtttttgtggatcac |
565 |
Q |
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| T |
25135125 |
ttgttgttgttgttggtagatcaaagttggagttaaaattgaaactgtt-gtttctttcactgcagcaagagaggagtcgatcgtgtttttgttgataac |
25135223 |
T |
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| Q |
566 |
ccacttttccttgaaaagg-ttgtatttctatgatttagttttcatcaatcagtggaatgttt |
627 |
Q |
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| T |
25135224 |
ccacttttccttgaagtggtttgtctttgtgtgattttgttttcatcaatcaatggaatgttt |
25135286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 728
Target Start/End: Original strand, 25077358 - 25077422
Alignment:
| Q |
665 |
ttaaactgactttattttt-ggcatttggaatatgaaaggtgtgggggaagaccgagtcaaaact |
728 |
Q |
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| T |
25077358 |
ttaaactgactttattttttggcttttggaatctgacaagtgtgggggaaggcctagtcaaaact |
25077422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 728
Target Start/End: Original strand, 25135327 - 25135391
Alignment:
| Q |
665 |
ttaaactgactttattttt-ggcatttggaatatgaaaggtgtgggggaagaccgagtcaaaact |
728 |
Q |
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| T |
25135327 |
ttaaactgactttattttttggcttttggaatctgacaagtgtgggggaaggcctagtcaaaact |
25135391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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