View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-6 (Length: 778)
Name: NF5212-Insertion-6
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 619; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 38998936 - 38998129
Alignment:
| Q |
8 |
ttacagtctcactctcacatgctcagtatgatcaaa-gatgtgcaatgtatgccacggcatagtttttgcacatatatcctttctttaagaacttaattg |
106 |
Q |
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| T |
38998936 |
ttacagtctcactctcacatgctctgtatgatcaaaagatgtgcaatgtatgccacggcatagtttttgcacatatatcctttctttaagaacttaattg |
38998837 |
T |
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| Q |
107 |
aaggattccaatttctctattataatcaagaaatatcttctgtaagtttaatacttaacaagtacatccaggtttaaagagatatgtcatgtcaagtag- |
205 |
Q |
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| T |
38998836 |
aaggattccaatttctctattataatcaagaaatatcttctgtaa------tacttaacaagtacatccaggtttaaagagatatgtcatgtcaagtagc |
38998743 |
T |
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| Q |
206 |
--------------------ttatcattagaatcaatagttcaagtgtctttctccctaaaaattattcattttcctcataatgaacttccaatt----- |
280 |
Q |
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| T |
38998742 |
tactagctgtttagactaagttatcattagaatcaatagttcaagtgtctttctccctaaaaattattcattttcctcataatgaacttccaattttctt |
38998643 |
T |
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| Q |
281 |
----------------cctactcttcatccttatgccacaacaaatttaatcagttctgcaagcatccctatcaagttttttatattgaagaataagcaa |
364 |
Q |
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| T |
38998642 |
tcttattctgccacttcctactcttcatccttatgcaacaacaaatttaatcagttctgcaagcatccctatcaagttttttatattgaagaataagcaa |
38998543 |
T |
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| Q |
365 |
atcataaaccaagtaaccgttacttcatcctagagtggcctattagcaccaaccgaagacaaaaggccaacatgatccttataagaaccacttcagcaaa |
464 |
Q |
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| T |
38998542 |
atcataaaccaagtaaccgttacttcatcctagagtggcctatgagcaccaaccgaagacaaaaggccaacatgatccttataagaaccacttcaacaaa |
38998443 |
T |
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| Q |
465 |
gtgcaaaataaccaaagttatcgaatttgatctttacatggacaattattttataatgatggcaaattaaaaggtattgtttagaagaagaaaaagagta |
564 |
Q |
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| T |
38998442 |
gtgcaaaataaccaaagttatggaatttgatctttacatggacaattattttataatgatggcaaattaaaaggtattgtttagaagaagaaaaagagta |
38998343 |
T |
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| Q |
565 |
cttgcctcctttacaaccagctcctcttgagccatatccaaattctggaggaagcttcaatgtacgtttacctcctaacataagaaaagggtaaaaaatg |
664 |
Q |
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| T |
38998342 |
cttgcctcctttacaaccagctcctcttgagccatatccaaattctggaggaagcttcaatgtacgtttacctcctaacataagaaaagggtaaaaaatg |
38998243 |
T |
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| Q |
665 |
tcacttcaacatgccatgatccatataacaaaatagaatttacagtgactgaaaaaacaagtacctgtaagcataggaggaattccatcatctcctaaaa |
764 |
Q |
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| T |
38998242 |
tcacttcaacatgtcatgatccataaaacaaaatagaatttacagtgactgaaaaaacaagtacctgtaagcataggaggaattccatcatctcctaaaa |
38998143 |
T |
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| Q |
765 |
tgcctacatcccat |
778 |
Q |
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| T |
38998142 |
tgcctacatcccat |
38998129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 652
Target Start/End: Original strand, 30437570 - 30437612
Alignment:
| Q |
610 |
tggaggaagcttcaatgtacgtttacctcctaacataagaaaa |
652 |
Q |
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| T |
30437570 |
tggaggaagcttcaatgtacgtttacctcttaatataaaaaaa |
30437612 |
T |
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