View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-7 (Length: 750)
Name: NF5212-Insertion-7
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 426 - 750
Target Start/End: Original strand, 30164281 - 30164605
Alignment:
| Q |
426 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
30164281 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatggtgtctgttcggcgatgtgggatgtgaaatcgatggcttactcttatcgcccttccc |
30164380 |
T |
|
| Q |
526 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
625 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30164381 |
taggggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
30164480 |
T |
|
| Q |
626 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtctaggt |
725 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
30164481 |
tttgcactctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtttgggaatctttatccttgcgtctgggt |
30164580 |
T |
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| Q |
726 |
tctctgcgcggtgctcttctgtgtg |
750 |
Q |
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| T |
30164581 |
tctctgcgcggtgctcttctgtgtg |
30164605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 426 - 750
Target Start/End: Original strand, 7660263 - 7660587
Alignment:
| Q |
426 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
525 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
7660263 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatggtgtctgttcggcgatgtgggatttgaaattgatggcttactcttatcgcccttcac |
7660362 |
T |
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| Q |
526 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
625 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7660363 |
aagaggcgtcaggtggattgttgactgcgtgggatttagcggaggtggaagtgtagtctactgtttatatggagcatgttttggttattcatggtcgttt |
7660462 |
T |
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| Q |
626 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtctaggt |
725 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7660463 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtctgggt |
7660562 |
T |
|
| Q |
726 |
tctctgcgcggtgctcttctgtgtg |
750 |
Q |
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||||| ||||||||||||||||||| |
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| T |
7660563 |
tctctacgcggtgctcttctgtgtg |
7660587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 39088525 - 39088232
Alignment:
| Q |
8 |
gttgacagatatagatagagatgggaaggtgagtggggatccattttcatttatcacaacaatatcccaacgnnnnnnnnn-tcagactaaagatgttgc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39088525 |
gttgacagatatagatagagatgggaaggtgagtggggatccattttcatttatcacaacaatatcccaacgaaaaaaaaaatcagactaaagatgttgc |
39088426 |
T |
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| Q |
107 |
cttgatggtctaagcagtgacctcactcaaattaagatgggacaaaacgttaatttcaaatatatgtataccctgcaagaccaaagttggcatgacttgg |
206 |
Q |
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| T |
39088425 |
cttgatggtctaagcagtgacctcactcaaattaagatgggacaaaacgttaatttcaaatatatgtataccctgcaagaccaaagttggcatgacttgt |
39088326 |
T |
|
| Q |
207 |
tcattcaagtaatacctcatttgcttnnnnnnnncatgtcacgtttgcatttctcactatttcaaaataattatcacgttaaaatatcaagaca |
300 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39088325 |
tcattcaagtaatacctcatttgcttaaaacaaacatgtcacgtttgcatttctcactatttcaaaataattatcacgttaaaatatcaagaca |
39088232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 384 - 427
Target Start/End: Complemental strand, 39088147 - 39088104
Alignment:
| Q |
384 |
gacaacctaaaataattgtcaatgtgcacaccgtatctacaaat |
427 |
Q |
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| T |
39088147 |
gacaacctaaaataattgtcaatgtgcacaccgtatctgcaaat |
39088104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 430 - 721
Target Start/End: Original strand, 45566793 - 45567084
Alignment:
| Q |
430 |
tgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttcccaaga |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | | |||| ||||||||||| |
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| T |
45566793 |
tgtgcttgcaagaaactaagttacaagtgtgtgatgatggtgtctgttcggcgatgtgggatttgaaatcgatggcttattttcatcgtccttcccaaga |
45566892 |
T |
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| Q |
530 |
ggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttttttg |
629 |
Q |
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||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||| |||| | ||||||||||||||||||||||| || |||||| |
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| T |
45566893 |
ggcgtcaggtgggttgttgaccgcgtgggatttaacagaggtggaggtgtggtctactgcttcctttgagcatgttttggttattcatggccgatttttg |
45566992 |
T |
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| Q |
630 |
caatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcgtct |
721 |
Q |
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| T |
45566993 |
aaatctgatgaagagttccatctgttaaatgtttatgctccttgtgacaatcgagctaggcgggtgttatgggaatccttatccttgcgtct |
45567084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 4e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 426 - 717
Target Start/End: Original strand, 10483912 - 10484203
Alignment:
| Q |
426 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
525 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||| || |||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
10483912 |
attgtgtgcttgcaagaaactaaattacaagtgtgcgatgatggtatctgttcggcgatgtgggatttgaaatcgatggctttttcttatcgtccttccc |
10484011 |
T |
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| Q |
526 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
625 |
Q |
| |
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||| ||||||||| |||||| ||||||| |||||||||||||||||||| | |||||||||||||||| | ||||||||||| |||||||||||||| || |
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| T |
10484012 |
aaggggcgtcaggcgggttgctgactgcatgggatttagcggaggtggaggcgtggtctactgtttccttagagcatgttttagttattcatggtcggtt |
10484111 |
T |
|
| Q |
626 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgc |
717 |
Q |
| |
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| T |
10484112 |
tctgaaatctaatgaagagttccatttgtttaatatttatgctccttgtgactttcgggctaggcaggtgttatgggaatccttatctttgc |
10484203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 426 - 718
Target Start/End: Complemental strand, 20472037 - 20471745
Alignment:
| Q |
426 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
525 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||| ||||||| ||||||||||| || |||||||| | ||| |||||||| || ||||| ||||| | |
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| T |
20472037 |
attgtatgcttgcatcaaactaagttgcaagtgtttgatgatggtgtctgttcgtcgttgtgggatctacaattgatggcttattcctatcgtccttcac |
20471938 |
T |
|
| Q |
526 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccg-tggagcatgttttggttattcatggtcgtt |
624 |
Q |
| |
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||| || ||||||||| ||||||||||||| |||| | | |||||||| ||||||||||||||||| | |||||||| || |||||||||||||| | |
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| T |
20471937 |
aag-ggtgtcaggtggcttgttgactgcgtaggatatgtctgaggtggagatgtggtctactgtttccccttgagcatgtcttagttattcatggtcggt |
20471839 |
T |
|
| Q |
625 |
ttttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcg |
718 |
Q |
| |
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||||| ||| |||||||||||| ||||||||||||| || || || ||||| ||||||||||||| ||| |||||||||| ||||||||||| |
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| T |
20471838 |
ttttgaaatttaatgaagagttccatttgtttaatgtttatgctccatgtgacaatcgggctaggcaggttttgtgggaatccttatccttgcg |
20471745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 426 - 718
Target Start/End: Complemental strand, 8719417 - 8719125
Alignment:
| Q |
426 |
attgtgtgcttgcaagaaactaagttacaagtgtgtgatgatagtgtctgttcggcgatgtgggatttgaaatcaatggcttactcttatcgcccttccc |
525 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| |||||| || | |||||| |||||||||||||||||| ||||||| |||| ||| ||||||| |
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| T |
8719417 |
attgtgtgcttgcaagaaacgaaattacaagtgtgcgatgatggtatatgttcgtcgatgtgggatttgaaattgatggctttttcttttcgtccttccc |
8719318 |
T |
|
| Q |
526 |
aagaggcgtcaggtgggttgttgactgcgtgggatttagcggaggtggaagtgtggtctactgtttccgtggagcatgttttggttattcatggtcgttt |
625 |
Q |
| |
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||| ||||||||| |||||||||| || |||||||||| |||||||||| |||||||||||||||||| | |||||||||| |||||||||||||| || |
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| T |
8719317 |
aaggggcgtcaggcgggttgttgaatgtgtgggatttaacggaggtggatgtgtggtctactgtttccttaaagcatgttttagttattcatggtcggtt |
8719218 |
T |
|
| Q |
626 |
tttgcaatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgataatcgggctaggcgggtggtgtgggaatctttatccttgcg |
718 |
Q |
| |
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| || |||||||||||||||| || |||||||| | || || || ||||| || ||||||||||||| | |||||||| ||||| ||||| |
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| T |
8719217 |
tctgaaatctaatgaagagttccatctgtttaatatttatgctccttgtgactctcaggctaggcgggtgttatgggaatccttatctttgcg |
8719125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 631 - 677
Target Start/End: Complemental strand, 29306343 - 29306297
Alignment:
| Q |
631 |
aatctaatgaagagttttatttgtttaatgtgtacgccccgtgtgat |
677 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||| |||||||||||| |
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|
| T |
29306343 |
aatctaatgaagagttttatatgttcaatatgtatgccccgtgtgat |
29306297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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