View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212-Insertion-8 (Length: 740)
Name: NF5212-Insertion-8
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 8 - 740
Target Start/End: Complemental strand, 39813431 - 39812699
Alignment:
| Q |
8 |
attttgtatgaaatgcaatgtgcgttactagacttcaaatcttcctcaagaggactagttgctattccattagtctcttcaccattagaggcattcataa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813431 |
attttgtatgaaatgcaatgtgcgttactagacttcaaatcttcctcaagaggactagttgctattccattagtctcttcaccattagaggcattcataa |
39813332 |
T |
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| Q |
108 |
gtttacaaattgtattctttagaccttcaatgccccaacgataatctatatgtactgcataatcttgatcaggcaaaagcttcccatcttctgtgtgaac |
207 |
Q |
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| T |
39813331 |
gtttacaaattgtattctttagaccttcaacgccccaacgataatctatatgtactgcataatcttgatcaggcaaaagcttcccatcttctgtgtgaac |
39813232 |
T |
|
| Q |
208 |
accagggtaataaacttcactcccactgctacaaactatagcatcaaattcagtcacttgaacatttcctgaggctagaaattccgttgtttcttgcatt |
307 |
Q |
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| T |
39813231 |
accagggtaataaacttcactcccactgctacaaactatagcatcaaattcagtcacttgaacatttcctgaggctagaaattccgttgtttcttgcatt |
39813132 |
T |
|
| Q |
308 |
gtcatagcggtcagcaaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813131 |
gtcatagcggtcagcaaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttat |
39813032 |
T |
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| Q |
408 |
caggatctccattactgtcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtatttgtttgatacattatcaagcaacat |
507 |
Q |
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| T |
39813031 |
caggatctccattactgtcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtatttgtttgatacattatcaagcaacat |
39812932 |
T |
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| Q |
508 |
gttctcatgatttgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcacca |
607 |
Q |
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| T |
39812931 |
gttctcatgatttgaaccagaatcttgcttccttatcttgcttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcacca |
39812832 |
T |
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| Q |
608 |
tcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccatt |
707 |
Q |
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| T |
39812831 |
tcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccatt |
39812732 |
T |
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| Q |
708 |
gtggatgcctcattctacacgcatccacgcgtg |
740 |
Q |
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| T |
39812731 |
gtggatgcctcattctacacgcatccacgcgtg |
39812699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 113 - 483
Target Start/End: Complemental strand, 15801311 - 15800941
Alignment:
| Q |
113 |
caaattgtattctttagaccttcaatgccccaacgataatctatatgtactgcataatcttgatcaggcaaaagcttcccatcttctgtgtgaacaccag |
212 |
Q |
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||||| || ||||||||||||||| |||||||||||| || ||||| | |||||||| ||||||| | ||| || |||||||| || | | ||| | |
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| T |
15801311 |
caaatggttttctttagaccttcacagccccaacgatagtcgatatgcgcctcataatctggatcaggaacaagttttccatcttcggtataagtaccgg |
15801212 |
T |
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| Q |
213 |
ggtaataaacttcactcccactgctacaaactatagcatcaaattcagtcacttgaacatttcctgaggctagaaattccgttgtttcttgcattgtcat |
312 |
Q |
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| T |
15801211 |
gatagtaaagttcactcccactactgcaaatcaaagcatcaaaatcatttacttgaatttttccagatttaaggaattctattgtttgtagtatcggcat |
15801112 |
T |
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| Q |
313 |
agcggtcagcaaagcgaatcccgaaactcttgcagtttgagggtctaattgaacagctttaattatcctttgaactatctcaatcaacttcttatcagga |
412 |
Q |
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| T |
15801111 |
agctgtcgataaagcaaatcccgaaactcttgcagtttgagggtctagttgaacagctttaatgattctttgaattatttggatcatattcttatcagga |
15801012 |
T |
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| Q |
413 |
tctccattactgtcataggaatcaagtgctataacaatcaacctgcgccttcgccttaatagagggtattt |
483 |
Q |
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| T |
15801011 |
gctccattatcatcgtacaaatcaaccgctataacaatcaacctccgccgtctcctcaatagaggatattt |
15800941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 602 - 720
Target Start/End: Complemental strand, 15800825 - 15800707
Alignment:
| Q |
602 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
701 |
Q |
| |
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||||||||||| || |||||||| ||||||||||| || || ||||||||||||||||| |||| || ||| || ||| ||| | | ||||||||||| |
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| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
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| Q |
702 |
gccattgtggatgcctcat |
720 |
Q |
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| T |
15800725 |
gccattgtggatgcctcat |
15800707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 15801407 - 15801350
Alignment:
| Q |
8 |
attttgtatgaaatgcaatgtgcgttactagacttcaaatcttcctcaagaggactag |
65 |
Q |
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||||||||||| ||||||||||||||||| || ||||||||||| |||| ||| |||| |
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| T |
15801407 |
attttgtatgagatgcaatgtgcgttacttgatttcaaatcttcttcaatagggctag |
15801350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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