View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5212_high_2 (Length: 435)
Name: NF5212_high_2
Description: NF5212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5212_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Original strand, 19202949 - 19203353
Alignment:
| Q |
10 |
ataattctacatctaattataacactctagttctaacaacagataaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatccct |
109 |
Q |
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| T |
19202949 |
ataattctacatctaattataacactctagttctaacaacagataaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatccct |
19203048 |
T |
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| Q |
110 |
tgtggcgccaagatcagatttgttctcctccgtaccagtaagttgtaccctaacaaaattgttcatgtaaagtttgtaaaccaatgaatattatgagcat |
209 |
Q |
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| T |
19203049 |
tgtggcgccaagatcagatttgttctcctccgtaccagtaagttgtaccctaacaaaattgttcatgtaaagtttgtaaaccaatgaatattatgagcat |
19203148 |
T |
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| Q |
210 |
ctttagttctaattttgtat--------aaaatatatctattgaactaaaatttacttcatgtagagaaaacatgagattttcaatggagagattccatt |
301 |
Q |
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| T |
19203149 |
ctttagttctaattttgtatagcttacaaaaatatatctattgaactaaaatttacttcatgtagagaaaacatgagattttcaatggagagattccatt |
19203248 |
T |
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| Q |
302 |
cttgttgatcaaacatggattctcaaaagttttcatattcaatattcaacttattgcaaactagccttgaaaaactagctttttcaatcttgttgccacc |
401 |
Q |
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| T |
19203249 |
cttgttgatcaaacatgga------------ttcatattcaatattcaacttattgcaaactagccttgaaaaactagcttttccaatcttgttgccacc |
19203336 |
T |
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| Q |
402 |
attatcatggtaaatat |
418 |
Q |
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| T |
19203337 |
attatcatggtaaatat |
19203353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 53 - 192
Target Start/End: Original strand, 19199099 - 19199238
Alignment:
| Q |
53 |
taaccaaatatcacctttgaaagactggttcttctgtataggtattttcctatcccttgtggcgccaagatcagatttgttctcctccgtaccagtaagt |
152 |
Q |
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| T |
19199099 |
taaccaaacattacctttgaaagactgagttttctgcataggtattttccgatcccttgtggcaccaaaatcagctttgttctcctccttaccagtaagt |
19199198 |
T |
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| Q |
153 |
tgtaccctaacaaaattgttcatgtaaagtttgtaaacca |
192 |
Q |
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| T |
19199199 |
tgtaccctaacagaattgttcatgtaaagtttgtaaacca |
19199238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 265 - 418
Target Start/End: Original strand, 19199525 - 19199669
Alignment:
| Q |
265 |
agagaaaacatgagattttcaatggagagattccattcttgttgatcaaacatggattctcaaaagttttcatattcaatattcaacttattgcaaacta |
364 |
Q |
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| T |
19199525 |
agagaaaacatgagattttcaatggtgagattc---------tgatcaaacaagggttctcaatagttttcatattcaatatttaatttattgcaaaata |
19199615 |
T |
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| Q |
365 |
gccttgaaaaactagctttttcaatcttgttgccaccattatcatggtaaatat |
418 |
Q |
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| T |
19199616 |
acgttgaaaaactagctttttcaatcttgttaccaccatttacatggtaaatat |
19199669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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